Detailed Description

Analyzers for molecular dynamics (MD) simulations with mdSim.

Classes
class	McMd::MdAnalyzerFactory
	AnalyzerFactory for an MdSimulation. More...

class	McMd::MdEnergyOutput
	Analyzer to output total potential and kinetic energies. More...

class	McMd::MdIntraBondStressAutoCorr
	Autocorrelation for bond stress of a molecule. More...

class	McMd::MdIntraBondTensorAutoCorr
	Autocorrelation for bond orientation of of a molecule. More...

class	McMd::MdKineticEnergyAverage
	MdKineticEnergyAverage averages of total kinetic energy. More...

class	McMd::MdPairEnergyCoefficients
	Analyzer to output the total pair energy and the sum of squares of the monomeric and molecular pair energy. More...

class	McMd::MdPotentialEnergyAverage
	MdPotentialEnergyAverage averages of total potential energy. More...

class	McMd::MdStressAutoCorr
	Analyzer to calculate average isotropic pressure. More...

class	McMd::MdVirialStressTensorAverage
	Periodically write (tensor) StressTensor to file. More...

class	McMd::MdAnalyzerManager
	Manager for Analyzer objects in an MdSimulation. More...

Classes