DdMd namespace

Detailed Description

DdMd namespace (parallel domain-decomposition MD)

Modules
	Analyzers
	Classes that implement data analysis or output operations.
	Chemical Structure
	Classes that describe atoms, molecules, and groups of atoms.
	MPI Communication
	Classes that control interprocessor communication.
	ConfigIos
	Config file reader / writers.
	MD Integrators
	Molecular dynamics integration algorithms.
	Modifiers
	Actions that can modify the state of the system.
	Nonbonded Neighbors
	Classes used to keep track of nonbonded neighbors.
	Potential Energies
	Classes used to calculate potential energies.
	Simulations
	Complete simulations.
	Storage
	Containers and iterators for atoms and groups.