AutoCorrAnalyzer.h

#ifndef DDMD_AUTO_CORR_ANALYZER_H
#define DDMD_AUTO_CORR_ANALYZER_H

/*
* Simpatico - Simulation Package for Polymeric and Molecular Liquids
*
* Copyright 2010 - 2017, The Regents of the University of Minnesota
* Distributed under the terms of the GNU General Public License.
*/

#include <ddMd/analyzers/Analyzer.h>             // base class
#include <util/accumulators/AutoCorrelation.h>   // member template

#include <ddMd/simulation/Simulation.h>          // used in implementation

namespace DdMd
{

   using namespace Util;

   template <typename Data, typename Product>
   class AutoCorrAnalyzer : public Analyzer
   {
   
   public:
   
      AutoCorrAnalyzer(Simulation& simulation);
   
      virtual ~AutoCorrAnalyzer()
      {} 
   
      virtual void readParameters(std::istream& in);
   
      virtual void loadParameters(Serializable::IArchive &ar);

      virtual void save(Serializable::OArchive &ar);
  
      virtual void clear();

      virtual void setup();
  
      virtual void sample(long iStep);

      virtual void output();

   protected:

      virtual void computeData()
      {}

      virtual Data data() = 0;

   private:
 
      std::ofstream  outputFile_;
      
      AutoCorrelation<Data, Product>*  accumulatorPtr_;

      int  bufferCapacity_;

      int  maxStageId_;

      long  isInitialized_;
   
   };

}
#endif