Crosslinker.h

#ifndef CROSSLINKER_H
#define CROSSLINKER_H

/*
* MolMcD - Monte Carlo and Molecular Dynamics Simulator for Molecular Liquids
*
* Copyright 2010 - 2014, The Regents of the University of Minnesota
* Distributed under the terms of the GNU General Public License.
*/

#include <mcMd/analyzers/SystemAnalyzer.h>
#include <mcMd/simulation/System.h>
#include <mcMd/neighbor/CellList.h>

namespace McMd
{
    
   using namespace Util;
  
   class Crosslinker : public SystemAnalyzer<System>
   {

   public:
   
      Crosslinker(System& system);

      virtual void readParameters(std::istream& in);

      void setup();
 
      void sample(long iStep);

   private:

      std::ofstream outputFile_;

      long    nSample_;

      CellList cellList_;

      double cutoff_;
      double probability_;
   
   };

}

#endif