3.1 Directory Structure

3.2 Namespaces (Next)

The following list explains the contents of the subdirectories of the root simpatico/ directory, and some of the most important subdirectories at the next level.

src/        - contains all C++ header (*.h) and source (*.cpp) files
   util/    - Util namespace
   simp/    - Simp namespace
   mcMd/    - McMd namespace
   ddMd/    - DdMd namespace
   tools/   - Tools namespace
   modules/ - modules for specific applications
   test/    - unit test framework
bld/        - directories for object (*.o) files and libraries
   serial/  - build directory for serial programs (mcSim and mdSim)
   paralel/ - build directory for mpi programs (ddSim, mcSim_m, mdSim_m)
bin/        - default location for executables
scripts/    - utility scripts for manipulating data, etc.
examples/   - example input files for simulations
doc/        - documentation, including web documentation
   html/    - location for html web pages, generated by doxygen
   manual/  - source files for main html manual pages

The purposes of the code in each of the namespace level subdirectories of the src/ directory is described in subsequent pages. The bld/serial and bld/parallel directories, which are used in the build process, each have a tree of subdirectories similar to that of the src/ directory, but are each initially almost empty.

3 Source Code Overview (Up)         3.2 Namespaces (Next)