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Simpatico
v1.10
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This is the complete list of members for DdMd::AtomStorage, including all inherited members.
| add(std::istream &in, const char *label, Type &value, bool isRequired=true) | Util::ParamComposite | protected |
| addAtom(int id) | DdMd::AtomStorage | |
| addBegin(const char *label) | Util::ParamComposite | |
| addBlank() | Util::ParamComposite | |
| addCArray(std::istream &in, const char *label, Type *value, int n, bool isRequired=true) | Util::ParamComposite | protected |
| addCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np, bool isRequired=true) | Util::ParamComposite | protected |
| addComponent(ParamComponent ¶m, bool isLeaf=true) | Util::ParamComposite | protected |
| addDArray(std::istream &in, const char *label, DArray< Type > &array, int n, bool isRequired=true) | Util::ParamComposite | protected |
| addDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired=true) | Util::ParamComposite | protected |
| addEnd() | Util::ParamComposite | |
| addFArray(std::istream &in, const char *label, FArray< Type, N > &array, bool isRequired=true) | Util::ParamComposite | protected |
| addGhost(int id) | DdMd::AtomStorage | |
| addNewAtom() | DdMd::AtomStorage | |
| addNewGhost() | DdMd::AtomStorage | |
| addParamComposite(ParamComposite &child, bool next=true) | Util::ParamComposite | |
| associate(Domain &domain, Boundary &boundary, Buffer &buffer) | DdMd::AtomStorage | |
| atomCapacity() const | DdMd::AtomStorage | inline |
| AtomStorage() | DdMd::AtomStorage | |
| begin(AtomIterator &iterator) | DdMd::AtomStorage | |
| begin(ConstAtomIterator &iterator) const | DdMd::AtomStorage | |
| begin(GhostIterator &iterator) | DdMd::AtomStorage | |
| begin(ConstGhostIterator &iterator) const | DdMd::AtomStorage | |
| className() const | Util::ParamComposite | inline |
| clearAtoms() | DdMd::AtomStorage | |
| clearCommunicator() | Util::MpiFileIo | |
| clearGhosts() | DdMd::AtomStorage | |
| clearSnapshot() | DdMd::AtomStorage | |
| clearStatistics() | DdMd::AtomStorage | |
| collector() | DdMd::AtomStorage | inline |
| computeNAtomTotal(MPI::Intracomm &communicator) | DdMd::AtomStorage | |
| computeStatistics(MPI::Intracomm &communicator) | DdMd::AtomStorage | virtual |
| distributor() | DdMd::AtomStorage | inline |
| echo() | Util::ParamComponent | static |
| ghostCapacity() const | DdMd::AtomStorage | inline |
| hasIoCommunicator() const | Util::MpiFileIo | inline |
| IArchive typedef | Util::Serializable | |
| indent() const | Util::ParamComponent | |
| initialize(int atomCapacity, int ghostCapacity, int totalAtomCapacity) | DdMd::AtomStorage | |
| initStatic() | Util::ParamComponent | static |
| ioCommunicator() const | Util::MpiFileIo | inline |
| isActive() const | Util::ParamComposite | inline |
| isCartesian() const | DdMd::AtomStorage | inline |
| isInitialized() const | DdMd::AtomStorage | |
| isIoProcessor() const | Util::MpiFileIo | inline |
| isRequired() const | Util::ParamComposite | inline |
| isValid() const | DdMd::AtomStorage | |
| isValid(MPI::Intracomm &communicator) const | DdMd::AtomStorage | |
| load(Serializable::IArchive &ar) | Util::ParamComposite | virtual |
| loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n, bool isRequired) | Util::ParamComposite | |
| loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n) | Util::ParamComposite | inline |
| loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np, bool isRequired) | Util::ParamComposite | |
| loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np) | Util::ParamComposite | |
| loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n, bool isRequired) | Util::ParamComposite | |
| loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n) | Util::ParamComposite | inline |
| loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired) | Util::ParamComposite | |
| loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n) | Util::ParamComposite | inline |
| loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n, bool isRequired) | Util::ParamComposite | |
| loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n) | Util::ParamComposite | inline |
| loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array, bool isRequired) | Util::ParamComposite | |
| loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array) | Util::ParamComposite | inline |
| loadOptional(Serializable::IArchive &ar) | Util::ParamComposite | virtual |
| loadParamComposite(Serializable::IArchive &ar, ParamComposite &child, bool next=true) | Util::ParamComposite | |
| loadParamCompositeOptional(Serializable::IArchive &ar, ParamComposite &child, bool next=true) | Util::ParamComposite | |
| loadParameter(Serializable::IArchive &ar, const char *label, Type &value, bool isRequired) | Util::ParamComposite | |
| loadParameter(Serializable::IArchive &ar, const char *label, Type &value) | Util::ParamComposite | inline |
| loadParameters(Serializable::IArchive &ar) | DdMd::AtomStorage | virtual |
| makeSnapshot() | DdMd::AtomStorage | |
| map() const | DdMd::AtomStorage | inline |
| maxNAtom() const | DdMd::AtomStorage | |
| maxNGhost() const | DdMd::AtomStorage | |
| maxSqDisplacement() | DdMd::AtomStorage | |
| MpiFileIo() | Util::MpiFileIo | |
| MpiFileIo(const MpiFileIo &other) | Util::MpiFileIo | |
| nAtom() const | DdMd::AtomStorage | inline |
| nAtomTotal() const | DdMd::AtomStorage | inline |
| newAtomPtr() | DdMd::AtomStorage | |
| newGhostPtr() | DdMd::AtomStorage | |
| nGhost() const | DdMd::AtomStorage | inline |
| OArchive typedef | Util::Serializable | |
| outputStatistics(std::ostream &out) | DdMd::AtomStorage | |
| ParamComponent() | Util::ParamComponent | protected |
| ParamComponent(const ParamComponent &other) | Util::ParamComponent | protected |
| ParamComposite() | Util::ParamComposite | |
| ParamComposite(const ParamComposite &other) | Util::ParamComposite | |
| ParamComposite(int capacity) | Util::ParamComposite | |
| read(std::istream &in, const char *label, Type &value) | Util::ParamComposite | |
| readBegin(std::istream &in, const char *label, bool isRequired=true) | Util::ParamComposite | |
| readBlank(std::istream &in) | Util::ParamComposite | |
| readCArray(std::istream &in, const char *label, Type *value, int n) | Util::ParamComposite | inline |
| readCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np) | Util::ParamComposite | inline |
| readDArray(std::istream &in, const char *label, DArray< Type > &array, int n) | Util::ParamComposite | inline |
| readDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n) | Util::ParamComposite | inline |
| readDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n) | Util::ParamComposite | inline |
| readEnd(std::istream &in) | Util::ParamComposite | |
| readFArray(std::istream &in, const char *label, FArray< Type, N > &array) | Util::ParamComposite | inline |
| readOptional(std::istream &in, const char *label, Type &value) | Util::ParamComposite | inline |
| readOptionalCArray(std::istream &in, const char *label, Type *value, int n) | Util::ParamComposite | inline |
| readOptionalCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np) | Util::ParamComposite | inline |
| readOptionalDArray(std::istream &in, const char *label, DArray< Type > &array, int n) | Util::ParamComposite | inline |
| readOptionalDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n) | Util::ParamComposite | inline |
| readOptionalDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n) | Util::ParamComposite | inline |
| readOptionalFArray(std::istream &in, const char *label, FArray< Type, N > &array) | Util::ParamComposite | inline |
| readParam(std::istream &in) | Util::ParamComposite | virtual |
| readParamComposite(std::istream &in, ParamComposite &child, bool next=true) | Util::ParamComposite | |
| readParamCompositeOptional(std::istream &in, ParamComposite &child, bool next=true) | Util::ParamComposite | |
| readParameters(std::istream &in) | DdMd::AtomStorage | virtual |
| readParamOptional(std::istream &in) | Util::ParamComposite | virtual |
| removeAtom(Atom *atomPtr) | DdMd::AtomStorage | |
| removeGhost(Atom *atomPtr) | DdMd::AtomStorage | |
| resetParam() | Util::ParamComposite | virtual |
| save(Serializable::OArchive &ar) | DdMd::AtomStorage | virtual |
| saveOptional(Serializable::OArchive &ar) | Util::ParamComposite | |
| serialize(Archive &ar, const unsigned int version) | Util::ParamComponent | |
| setClassName(const char *className) | Util::ParamComposite | protected |
| setEcho(bool echo=true) | Util::ParamComponent | static |
| setIndent(const ParamComponent &parent, bool next=true) | Util::ParamComponent | |
| setIoCommunicator(MPI::Intracomm &communicator) | Util::MpiFileIo | |
| setIsActive(bool isActive) | Util::ParamComposite | protected |
| setIsRequired(bool isRequired) | Util::ParamComposite | protected |
| setParent(ParamComponent ¶m, bool next=true) | Util::ParamComposite | protected |
| totalAtomCapacity() const | DdMd::AtomStorage | inline |
| transformCartToGen(const Boundary &boundary) | DdMd::AtomStorage | |
| transformGenToCart(const Boundary &boundary) | DdMd::AtomStorage | |
| unsetNAtomTotal() | DdMd::AtomStorage | |
| writeParam(std::ostream &out) | Util::ParamComposite | virtual |
| zeroForces(bool zeroGhosts) | DdMd::AtomStorage | |
| ~AtomStorage() | DdMd::AtomStorage | |
| ~ParamComponent() | Util::ParamComponent | virtual |
| ~ParamComposite() | Util::ParamComposite | virtual |
| ~Serializable() | Util::Serializable | inlinevirtual |
1.8.11