Simpatico
v1.10
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X
A
Diblock
(
Simp
)
McCoulombPotential
(
McMd
)
PairPotential
(
DdMd
)
DpdPair
(
Simp
)
McDeformCommand
(
McMd
)
PairPotentialImpl
(
DdMd
)
Analyzer
(
DdMd
)
DdMdConfigReader
(
Tools
)
McEnergyAnalyzer
(
McMd
)
Plan
(
DdMd
)
AnalyzerFactory
(
DdMd
)
DdMdConfigWriter
(
Tools
)
McEnergyAverage
(
McMd
)
Potential
(
DdMd
)
AnalyzerManager
(
DdMd
)
DdMdTrajectoryReader
(
Tools
)
McEnergyOutput
(
McMd
)
PressureAnalyzer
(
DdMd
)
AngleFactory
(
DdMd
)
DArray
(
Util
)
McEnergyPerturbation
(
McMd
)
PairFactory
(
McMd
)
AnglePotential
(
DdMd
)
DArrayParam
(
Util
)
McExternalEnergyAverage
(
McMd
)
PairIterator
(
McMd
)
AnglePotentialImpl
(
DdMd
)
Dbl
(
Util
)
McExternalPerturbation
(
McMd
)
PairList
(
McMd
)
AngleStorage
(
DdMd
)
Distribution
(
Util
)
McIntraBondStressAutoCorr
(
McMd
)
PairPotential
(
McMd
)
Atom
(
DdMd
)
DMatrix
(
Util
)
McIntraBondTensorAutoCorr
(
McMd
)
PairSelector
(
McMd
)
AtomArray
(
DdMd
)
DMatrixParam
(
Util
)
McMdConfigIo
(
McMd
)
Perturbation
(
McMd
)
AtomCollector
(
DdMd
)
DPArray
(
Util
)
McMove
(
McMd
)
PerturbDerivative
(
McMd
)
AtomContext
(
DdMd
)
DRaggedMatrix
(
Util
)
McMoveFactory
(
McMd
)
PointGenerator
(
McMd
)
AtomDistributor
(
DdMd
)
DSArray
(
Util
)
McMoveManager
(
McMd
)
PressureAverage
(
McMd
)
AtomIterator
(
DdMd
)
DSymmMatrixParam
(
Util
)
McMuExchange
(
McMd
)
ParamFileTest
AtomMap
(
DdMd
)
E
McNVTChemicalPotential
(
McMd
)
PeriodicExternal
(
Simp
)
AtomStorage
(
DdMd
)
McPairEnergyAverage
(
McMd
)
Point
(
Simp
)
AtomType
(
DdMd
)
EnergyAnalyzer
(
DdMd
)
McPairExternalPerturbation
(
McMd
)
PairEnergy
(
Tools
)
AutoCorrAnalyzer
(
DdMd
)
Exchanger
(
DdMd
)
McPairPerturbation
(
McMd
)
Processor
(
Tools
)
AverageAnalyzer
(
DdMd
)
ExternalEnergyAnalyzer
(
DdMd
)
McPairPotential
(
McMd
)
ProcessorAnalyzerFactory
(
Tools
)
Activate
(
McMd
)
ExternalEnergyAverage
(
DdMd
)
McPairPotentialImpl
(
McMd
)
ProcessorAnalyzerManager
(
Tools
)
Analyzer
(
McMd
)
ExternalFactory
(
DdMd
)
McPerturbationFactory
(
McMd
)
Pair
(
Util
)
AnalyzerManager
(
McMd
)
ExternalPotential
(
DdMd
)
McPressureAverage
(
McMd
)
ParamComponent
(
Util
)
AngleFactory
(
McMd
)
ExternalPotentialImpl
(
DdMd
)
McSimulation
(
McMd
)
ParamComposite
(
Util
)
AnglePotential
(
McMd
)
EndSwapMove
(
McMd
)
McStressAutoCorrelation
(
McMd
)
Parameter
(
Util
)
AnglePotentialImpl
(
McMd
)
EndtoEnd
(
McMd
)
McSystem
(
McMd
)
PArray
(
Util
)
Atom
(
McMd
)
EndtoEndXYZ
(
McMd
)
McSystemInterface
(
McMd
)
PArrayIterator
(
Util
)
AtomDisplaceMove
(
McMd
)
EnergyCalculator
(
McMd
)
McVirialStressTensorAverage
(
McMd
)
PointGroup
(
Util
)
AtomMSD
(
McMd
)
EwaldRSpaceAccumulator
(
McMd
)
MdAnalyzerFactory
(
McMd
)
PointSymmetry
(
Util
)
AtomType
(
McMd
)
ExternalFactory
(
McMd
)
MdAnalyzerManager
(
McMd
)
Polynomial
(
Util
)
AverageAnalyzer
(
McMd
)
ExternalPotential
(
McMd
)
MdColVar
(
McMd
)
R
Analyzer
(
Tools
)
ExternalPotentialImpl
(
McMd
)
MdCommandFactory
(
McMd
)
AnalyzerManager
(
Tools
)
EnergyEnsemble
(
Simp
)
MdCommandManager
(
McMd
)
RadiusGyration
(
McMd
)
Atom
(
Tools
)
EwaldInteraction
(
Simp
)
MdConfigIo
(
McMd
)
RDF
(
McMd
)
AtomMSD
(
Tools
)
End
(
Util
)
MdCoulombPotential
(
McMd
)
ReplicaMove
(
McMd
)
AtomStorage
(
Tools
)
Exception
(
Util
)
MdDeformCommand
(
McMd
)
ReSetAtomEvent
(
McMd
)
Ar1Process
(
Util
)
F
MdEnergyAnalyzer
(
McMd
)
RigidDisplaceMove
(
McMd
)
Array
(
Util
)
MdEnergyOutput
(
McMd
)
RingOctaRebridgeMove
(
McMd
)
ArrayIterator
(
Util
)
Modifier::Flags
(
DdMd
)
MdEwaldPairPotentialImpl
(
McMd
)
RingRouseAutoCorr
(
McMd
)
ArraySet
(
Util
)
FeneBond
(
Simp
)
MdEwaldPotential
(
McMd
)
RingTetraRebridgeMove
(
McMd
)
ArrayStack
(
Util
)
Factory
(
Util
)
MdIntegrator
(
McMd
)
Ring
(
Simp
)
AutoCorr
(
Util
)
FArray
(
Util
)
MdIntegratorFactory
(
McMd
)
RadialDistribution
(
Util
)
AutoCorrArray
(
Util
)
FArrayParam
(
Util
)
MdIntraBondStressAutoCorr
(
McMd
)
RaggedMatrix
(
Util
)
AutoCorrelation
(
Util
)
FileMaster
(
Util
)
MdIntraBondTensorAutoCorr
(
McMd
)
Random
(
Util
)
AutoCorrStage
(
Util
)
FlagSet
(
Util
)
MdKineticEnergyAverage
(
McMd
)
RArray
(
Util
)
Average
(
Util
)
FlexPtr
(
Util
)
MdMove
(
McMd
)
Rational
(
Util
)
AverageStage
(
Util
)
FMatrix
(
Util
)
MdPairEnergyCoefficients
(
McMd
)
RingBuffer
(
Util
)
B
Format
(
Util
)
MdPairPotential
(
McMd
)
S
FPArray
(
Util
)
MdPairPotentialImpl
(
McMd
)
BondFactory
(
DdMd
)
FSArray
(
Util
)
MdPotentialEnergyAverage
(
McMd
)
SerializeConfigIo
(
DdMd
)
BondPotential
(
DdMd
)
G
MdPressureAverage
(
McMd
)
Simulation
(
DdMd
)
BondPotentialImpl
(
DdMd
)
MdSimulation
(
McMd
)
SimulationAccess
(
DdMd
)
BondStorage
(
DdMd
)
GhostIterator
(
DdMd
)
MdSpmePotential
(
McMd
)
StressAnalyzer
(
DdMd
)
BondTensorAutoCorr
(
DdMd
)
Group
(
DdMd
)
MdStressAutoCorr
(
McMd
)
StressAutoCorr
(
DdMd
)
Buffer
(
DdMd
)
GroupCollector
(
DdMd
)
MdSystem
(
McMd
)
StressAutoCorrelation
(
DdMd
)
BennettsMethod
(
McMd
)
GroupDistributor
(
DdMd
)
MdSystemInterface
(
McMd
)
StructureFactor
(
DdMd
)
BlockRadiusGyration
(
McMd
)
GroupExchanger
(
DdMd
)
MdVirialStressTensorAverage
(
McMd
)
StructureFactorGrid
(
DdMd
)
BondFactory
(
McMd
)
GroupIterator
(
DdMd
)
Molecule
(
McMd
)
SymmTensorAverageAnalyzer
(
DdMd
)
BondLengthDist
(
McMd
)
GroupStorage
(
DdMd
)
MoleculeSetObserver
(
McMd
)
SemiGrandDistribution
(
McMd
)
BondPotential
(
McMd
)
G1MSD
(
McMd
)
MonoclinicBoundary
(
Simp
)
Simulation
(
McMd
)
BondPotentialImpl
(
McMd
)
GcSliplinkMove
(
McMd
)
Multiblock
(
Simp
)
Sliplinker
(
McMd
)
BoundaryAverage
(
McMd
)
Generator
(
McMd
)
MultiHarmonicDihedral
(
Simp
)
SliplinkerAll
(
McMd
)
Bend
(
Simp
)
Group
(
McMd
)
Molecule
(
Tools
)
SliplinkerEnd
(
McMd
)
BendForce
(
Simp
)
GroupRebridgeBase
(
McMd
)
Manager
(
Util
)
SliplinkMcAnalyzerFactory
(
McMd
)
BoundaryEnsemble
(
Simp
)
GeneralPeriodicExternal
(
Simp
)
Matrix
(
Util
)
SliplinkMcModule
(
McMd
)
BoxExternal
(
Simp
)
Group
(
Tools
)
MeanSqDispArray
(
Util
)
SliplinkMcMoveFactory
(
McMd
)
Begin
(
Util
)
GroupStorage
(
Tools
)
Memory
(
Util
)
SliplinkMdAnalyzerFactory
(
McMd
)
BinaryFileIArchive
(
Util
)
GArray
(
Util
)
MemoryCounter
(
Util
)
SliplinkMove
(
McMd
)
BinaryFileOArchive
(
Util
)
GPArray
(
Util
)
MemoryIArchive
(
Util
)
SmpConfigIo
(
McMd
)
Binomial
(
Util
)
Grid
(
Util
)
MemoryOArchive
(
Util
)
SpecialExternal
(
McMd
)
Bit
(
Util
)
GridArray
(
Util
)
MethodFunctor
(
Util
)
SpecialFactory
(
McMd
)
Blank
(
Util
)
GStack
(
Util
)
MethodFunctor< Object, void >
(
Util
)
SpecialPotential
(
McMd
)
Bool
(
Util
)
H
MpiFileIo
(
Util
)
SpecialPotentialFacade
(
McMd
)
C
MpiLoader
(
Util
)
SpeciesFactory
(
McMd
)
HarmonicCvBias
(
McMd
)
MpiLogger
(
Util
)
SpeciesManager
(
McMd
)
CommandLine
HomopolymerSemiGrandMove
(
McMd
)
MpiStructBuilder
(
Util
)
SpeciesMutator
(
McMd
)
CompositeTestRunner
HomopolymerSG
(
McMd
)
MpiTraits
(
Util
)
SSChainDist
(
McMd
)
Cell
(
DdMd
)
HybridMdMove
(
McMd
)
MpiTraits< bool >
(
Util
)
StressAutoCorr
(
McMd
)
CellAtom
(
DdMd
)
HybridNphMdMove
(
McMd
)
MpiTraits< char >
(
Util
)
StressCalculator
(
McMd
)
CellList
(
DdMd
)
HarmonicAngle
(
Simp
)
MpiTraits< DdMd::AtomType >
(
Util
)
StressTensorAverage
(
McMd
)
ConfigIo
(
DdMd
)
HarmonicBond
(
Simp
)
MpiTraits< DdMd::MaskPolicy >
(
Util
)
StructureFactor
(
McMd
)
ConfigIoFactory
(
DdMd
)
HarmonicL0Bond
(
Simp
)
MpiTraits< double >
(
Util
)
StructureFactorGrid
(
McMd
)
ConfigWriter
(
DdMd
)
Homopolymer
(
Simp
)
MpiTraits< float >
(
Util
)
StructureFactorP
(
McMd
)
ConstAtomIterator
(
DdMd
)
HomoRing
(
Simp
)
MpiTraits< int >
(
Util
)
StructureFactorPGrid
(
McMd
)
ConstGhostIterator
(
DdMd
)
HoomdConfigReader
(
Tools
)
MpiTraits< IntVector >
(
Util
)
System
(
McMd
)
ConstGroupIterator
(
DdMd
)
HoomdConfigWriter
(
Tools
)
MpiTraits< long >
(
Util
)
SystemAnalyzer
(
McMd
)
Cell
(
McMd
)
I
MpiTraits< long double >
(
Util
)
SystemAnalyzerFactory
(
McMd
)
CellList
(
McMd
)
MpiTraits< McMd::AtomType >
(
Util
)
SystemInterface
(
McMd
)
CellTag
(
McMd
)
Integrator
(
DdMd
)
MpiTraits< McMd::MaskPolicy >
(
Util
)
SystemMove
(
McMd
)
CfbDoubleRebridgeMove
(
McMd
)
IntegratorFactory
(
DdMd
)
MpiTraits< McMd::PairSelector >
(
Util
)
SimplePeriodicExternal
(
Simp
)
CfbEndBase
(
McMd
)
InterIntraLink
(
McMd
)
MpiTraits< McMd::PairSelector::PairType >
(
Util
)
SlitExternal
(
Simp
)
CfbEndMove
(
McMd
)
IntraBondStressAutoCorr
(
McMd
)
MpiTraits< MonoclinicBoundary >
(
Util
)
Species
(
Simp
)
CfbLinear
(
McMd
)
IntraBondTensorAutoCorr
(
McMd
)
MpiTraits< Pair< int > >
(
Util
)
SpeciesEnsemble
(
Simp
)
CfbLinearEndMove
(
McMd
)
IntraPairAutoCorr
(
McMd
)
MpiTraits< Rational >
(
Util
)
SpeciesGroup
(
Simp
)
CfbRebridgeBase
(
McMd
)
IntraStructureFactor
(
McMd
)
MpiTraits< short >
(
Util
)
SphericalTabulatedExternal
(
Simp
)
CfbRebridgeMove
(
McMd
)
IntraStructureFactorGrid
(
McMd
)
MpiTraits< Simp::BoundaryEnsemble >
(
Util
)
Species
(
Tools
)
CfbReptateMove
(
McMd
)
IFunctor
(
Util
)
MpiTraits< Simp::BoundaryEnsemble::Type >
(
Util
)
ScalarParam
(
Util
)
CfbReptationMove
(
McMd
)
IFunctor< void >
(
Util
)
MpiTraits< Simp::EnergyEnsemble >
(
Util
)
ScopedPtr
(
Util
)
CfbRingRebridgeMove
(
McMd
)
Int
(
Util
)
MpiTraits< Simp::EnergyEnsemble::Type >
(
Util
)
Serializable
(
Util
)
Cluster
(
McMd
)
IntDistribution
(
Util
)
MpiTraits< Simp::OrthorhombicBoundary >
(
Util
)
Setable
(
Util
)
ClusterHistogram
(
McMd
)
IntVector
(
Util
)
MpiTraits< Simp::SpeciesEnsemble >
(
Util
)
Signal
(
Util
)
ClusterIdentifier
(
McMd
)
K
MpiTraits< Simp::SpeciesEnsemble::Type >
(
Util
)
Signal< void >
(
Util
)
ClusterLink
(
McMd
)
MpiTraits< Simp::SpeciesGroup< 2 > >
(
Util
)
SSet
(
Util
)
ColVar
(
McMd
)
KineticEnergyAnalyzer
(
DdMd
)
MpiTraits< Simp::SpeciesGroup< 3 > >
(
Util
)
Str
(
Util
)
ColVarPotentialTmpl
(
McMd
)
L
MpiTraits< Simp::SpeciesGroup< 4 > >
(
Util
)
SymmetryGroup
(
Util
)
Command
(
McMd
)
MpiTraits< Tensor >
(
Util
)
SymmTensorAverage
(
Util
)
CommandManager
(
McMd
)
LammpsConfigIo
(
DdMd
)
MpiTraits< unsigned char >
(
Util
)
T
ComMSD
(
McMd
)
LammpsDumpWriter
(
DdMd
)
MpiTraits< unsigned int >
(
Util
)
CompositionProfile
(
McMd
)
LogEnergy
(
DdMd
)
MpiTraits< unsigned long >
(
Util
)
TensorAverageAnalyzer
(
DdMd
)
ConfigIo
(
McMd
)
LammpsConfigIo
(
McMd
)
MpiTraits< unsigned short >
(
Util
)
TrajectoryWriter
(
DdMd
)
ConfigIoFactory
(
McMd
)
LammpsDumpReader
(
McMd
)
MpiTraits< Util::LatticeSystem >
(
Util
)
TwoStepIntegrator
(
DdMd
)
ConfigWriter
(
McMd
)
LammpsDumpWriter
(
McMd
)
MpiTraits< Vector >
(
Util
)
TrajectoryReader
(
McMd
)
CoulombFactory
(
McMd
)
LinearCvBias
(
McMd
)
MpiTraitsNoType
(
Util
)
TrajectoryReaderFactory
(
McMd
)
Crosslinker
(
McMd
)
LinearGenerator
(
McMd
)
MTRand
(
Util
)
TrajectoryWriter
(
McMd
)
CvBias
(
McMd
)
LinearPerturbation
(
McMd
)
MTRand53
(
Util
)
TypeDistribution
(
McMd
)
CompensatedPair
(
Simp
)
LinearRouseAutoCorr
(
McMd
)
MTRand_closed
(
Util
)
Torsion
(
Simp
)
CompositeBond
(
Simp
)
LinearSG
(
McMd
)
MTRand_int32
(
Util
)
TorsionForce
(
Simp
)
CosineAngle
(
Simp
)
Link
(
McMd
)
MTRand_open
(
Util
)
TestA
CosineDihedral
(
Simp
)
LinkAddEvent
(
McMd
)
N
TestB
CosineSqAngle
(
Simp
)
LinkFactory
(
McMd
)
TestException
Cell
(
Tools
)
LinkLengthDist
(
McMd
)
NphIntegrator
(
DdMd
)
TestRunner
CellAtom
(
Tools
)
LinkLifeTime
(
McMd
)
NptIntegrator
(
DdMd
)
TrajectoryReader
(
Tools
)
CellList
(
Tools
)
LinkLTPos
(
McMd
)
NveIntegrator
(
DdMd
)
TrajectoryReaderFactory
(
Tools
)
ChainMaker
(
Tools
)
LinkMaster
(
McMd
)
NvtIntegrator
(
DdMd
)
TrajectoryWriter
(
Tools
)
ConfigReader
(
Tools
)
LinkMSD
(
McMd
)
NvtLangevinIntegrator
(
DdMd
)
TypeMap
(
Tools
)
ConfigReaderFactory
(
Tools
)
LinkPotentialImpl
(
McMd
)
NLinkAverage
(
McMd
)
Tensor
(
Util
)
Configuration
(
Tools
)
LinkRemoveEvent
(
McMd
)
NphIntegrator
(
McMd
)
TensorAverage
(
Util
)
ConfigWriter
(
Tools
)
LinkResetEvent
(
McMd
)
NveVvIntegrator
(
McMd
)
TextFileIArchive
(
Util
)
ConfigWriterFactory
(
Tools
)
LogProgress
(
McMd
)
NvtDpdVvIntegrator
(
McMd
)
TextFileOArchive
(
Util
)
CardinalBSpline
(
Util
)
LamellarOrderingExternal
(
Simp
)
NvtLangevinIntegrator
(
McMd
)
Timer
(
Util
)
CArray2DParam
(
Util
)
Linear
(
Simp
)
NvtNhIntegrator
(
McMd
)
U
CArrayParam
(
Util
)
LJPair
(
Simp
)
NucleationExternal
(
Simp
)
Constants
(
Util
)
LocalLamellarOrderingExternal
(
Simp
)
Node
(
Util
)
UnitTest
ConstArrayIterator
(
Util
)
LammpsDumpReader
(
Tools
)
Notifier
(
Util
)
UnitTestRunner
ConstPArrayIterator
(
Util
)
LammpsDumpWriter
(
Tools
)
O
V
D
LogStep
(
Tools
)
Label
(
Util
)
OrderParamNucleation
(
DdMd
)
VanHove
(
DdMd
)
DdMdConfigIo
(
DdMd
)
List
(
Util
)
OutputBoxdim
(
DdMd
)
VirialStressAnalyzer
(
DdMd
)
DdMdGroupTrajectoryWriter
(
DdMd
)
ListArray
(
Util
)
OutputEnergy
(
DdMd
)
VirialStressTensor
(
DdMd
)
DdMdOrderedConfigIo
(
DdMd
)
ListIterator
(
Util
)
OutputPairEnergies
(
DdMd
)
VirialStressTensorAverage
(
DdMd
)
DdMdTrajectoryWriter
(
DdMd
)
Lng
(
Util
)
OutputPressure
(
DdMd
)
VanHove
(
McMd
)
DdTimer
(
DdMd
)
Log
(
Util
)
OutputStressTensor
(
DdMd
)
VelProf
(
McMd
)
DihedralFactory
(
DdMd
)
M
OutputTemperature
(
DdMd
)
Vector
(
Util
)
DihedralPotential
(
DdMd
)
OrthoBoxExternal
(
Simp
)
W
DihedralPotentialImpl
(
DdMd
)
Mask
(
DdMd
)
OrthoRegion
(
Simp
)
DihedralStorage
(
DdMd
)
Modifier
(
DdMd
)
OrthorhombicBoundary
(
Simp
)
WcaPair
(
Simp
)
Domain
(
DdMd
)
ModifierFactory
(
DdMd
)
Observer
(
Util
)
X
DCDTrajectoryReader
(
McMd
)
ModifierManager
(
DdMd
)
OptionalLabel
(
Util
)
DdMdConfigIo
(
McMd
)
Mask
(
McMd
)
P
XdrFileIArchive
(
Util
)
DdMdTrajectoryReader
(
McMd
)
McAnalyzerFactory
(
McMd
)
XdrFileOArchive
(
Util
)
DeformCommand
(
McMd
)
McAnalyzerManager
(
McMd
)
PairEnergyAnalyzer
(
DdMd
)
XmlAttribute
(
Util
)
DihedralFactory
(
McMd
)
McBondEnergyAverage
(
McMd
)
PairEnergyAverage
(
DdMd
)
XmlBase
(
Util
)
DihedralPotential
(
McMd
)
McCommandFactory
(
McMd
)
PairFactory
(
DdMd
)
XmlEndTag
(
Util
)
DihedralPotentialImpl
(
McMd
)
McCommandManager
(
McMd
)
PairIterator
(
DdMd
)
XmlStartTag
(
Util
)
DpdMove
(
McMd
)
McConfigIo
(
McMd
)
PairList
(
DdMd
)
XmlXmlTag
(
Util
)
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