Util::ParamComponent Class Reference

Detailed Description

Abstract base class for classes that input and ouput parameters to file.

The readParam method reads a parameter or parameter list from iostream. The writeParam method writes a parameter or parameter list to an ostream. The same io format should be used by write and read methods.

Definition at line 31 of file ParamComponent.h.

#include <ParamComponent.h>

Inheritance diagram for Util::ParamComponent:

Public Member Functions
virtual	~ParamComponent ()
	Destructor. More...
virtual void	readParam (std::istream &in)=0
	Read parameter(s) from file. More...
virtual void	writeParam (std::ostream &out)=0
	Read parameter(s) to file. More...
virtual void	load (Serializable::IArchive &ar)
	Load internal state from an archive. More...
virtual void	save (Serializable::OArchive &ar)
	Save internal state to an archive. More...
virtual void	resetParam ()
	Nontrivial implementation provided by ParamComposite subclass. More...
void	setIndent (const ParamComponent &parent, bool next=true)
	Set indent level. More...
std::string	indent () const
	Return indent string for this object (string of spaces). More...
template<class Archive >
void	serialize (Archive &ar, const unsigned int version)
	Serialize this ParamComponent as a string. More...
Public Member Functions inherited from Util::Serializable
virtual	~Serializable ()
	Destructor. More...
Public Member Functions inherited from Util::MpiFileIo
	MpiFileIo ()
	Constructor. More...
	MpiFileIo (const MpiFileIo &other)
	Copy constructor. More...
bool	isIoProcessor () const
	Can this processor do file I/O ? More...
void	setIoCommunicator (MPI::Intracomm &communicator)
	Set the communicator. More...
void	clearCommunicator ()
	Clear (nullify) the communicator. More...
bool	hasIoCommunicator () const
	Does this object have an associated MPI communicator? More...
MPI::Intracomm &	ioCommunicator () const
	Get the MPI communicator by reference. More...

Static Public Member Functions
static void	initStatic ()
	Initialize static echo member to false. More...
static void	setEcho (bool echo=true)
	Enable or disable echoing for all subclasses of ParamComponent. More...
static bool	echo ()
	Get echo parameter. More...

Protected Member Functions
	ParamComponent ()
	Constructor. More...
	ParamComponent (const ParamComponent &other)
	Copy constructor. More...

Additional Inherited Members
Public Types inherited from Util::Serializable
typedef BinaryFileOArchive	OArchive
	Type of output archive used by save method. More...
typedef BinaryFileIArchive	IArchive
	Type of input archive used by load method. More...

Constructor & Destructor Documentation

Util::ParamComponent::~ParamComponent ( )

virtual

Destructor.

Definition at line 36 of file ParamComponent.cpp.

Util::ParamComponent::ParamComponent ( )

protected

Constructor.

Protected to prevent instantiation of a conceptually abstract class.

On return the indent string is empty. If UTIL_MPI is defined, no communicator is set upon construction.

Definition at line 20 of file ParamComponent.cpp.

Referenced by resetParam().

Util::ParamComponent::ParamComponent ( const ParamComponent &  other )

protected

Copy constructor.

Definition at line 28 of file ParamComponent.cpp.

Member Function Documentation

virtual void Util::ParamComponent::readParam ( std::istream &  in )

pure virtual

Read parameter(s) from file.

Parameters

in	input stream

Implemented in DdMd::Simulation, Util::ParamComposite, Util::Parameter, McMd::McSimulation, McMd::MdSimulation, Util::Manager< Data >, Util::Manager< Command >, Util::Manager< Modifier >, Util::Manager< McMove >, Util::Manager< Analyzer >, Util::Manager< Simp::Species >, Simp::SpeciesEnsemble, Util::Begin, Util::Blank, Util::End, and Tools::ChainMaker.

Referenced by serialize().

virtual void Util::ParamComponent::writeParam ( std::ostream &  out )

pure virtual

Read parameter(s) to file.

Parameters

out	output stream

Implemented in Util::ParamComposite, Simp::MultiHarmonicDihedral, Util::CArray2DParam< Type >, Util::ScalarParam< Type >, Util::Begin, Util::DMatrixParam< Type >, Util::DSymmMatrixParam< Type >, Util::Blank, Util::End, Util::FArrayParam< Type, N >, Util::DArrayParam< Type >, and Util::CArrayParam< Type >.

Referenced by Util::Parameter::load(), Util::Parameter::readParam(), and serialize().

virtual void Util::ParamComponent::load ( Serializable::IArchive &  ar )

inlinevirtual

Load internal state from an archive.

The default implementation is empty. This default is used by the Begin, End, and Blank subclasses.

Implements Util::Serializable.

Reimplemented in Util::ParamComposite, Util::Parameter, McMd::McNVTChemicalPotential, Util::AutoCorrelation< Data, Product >, Util::AutoCorrelation< Tensor, double >, and Util::AutoCorrelation< Util::Tensor, double >.

Definition at line 61 of file ParamComponent.h.

virtual void Util::ParamComponent::save ( Serializable::OArchive &  ar )

inlinevirtual

Save internal state to an archive.

The default implementation is empty. This default is used by the Begin, End, and Blank subclasses.

Implements Util::Serializable.

Reimplemented in DdMd::Buffer, Util::ParamComposite, Util::FileMaster, DdMd::Simulation, McMd::Simulation, Util::Parameter, Simp::Species, McMd::MdSimulation, McMd::McSimulation, McMd::IntraStructureFactor, McMd::StructureFactorP, DdMd::PairPotential, Util::Manager< Data >, Util::Manager< Command >, Util::Manager< Modifier >, Util::Manager< McMove >, Util::Manager< Analyzer >, Util::Manager< Simp::Species >, DdMd::Analyzer, McMd::VanHove, DdMd::VanHove, DdMd::AtomStorage, DdMd::StructureFactor, Simp::OrthoBoxExternal, DdMd::PairPotentialImpl< Interaction >, Simp::LocalLamellarOrderingExternal, DdMd::GroupStorage< N >, DdMd::GroupStorage< 2 >, DdMd::GroupStorage< 3 >, DdMd::GroupStorage< 4 >, Simp::BoxExternal, McMd::IntraStructureFactorGrid, McMd::BlockRadiusGyration, Simp::SlitExternal, McMd::ReplicaMove, Simp::LamellarOrderingExternal, Util::AutoCorrArray< Data, Product >, DdMd::StructureFactorGrid, Util::AutoCorrArray< Util::Vector, double >, Util::AutoCorrArray< Util::Tensor, double >, Simp::GeneralPeriodicExternal, Simp::NucleationExternal, Simp::PeriodicExternal, Simp::SimplePeriodicExternal, McMd::StructureFactorGrid, McMd::StructureFactorPGrid, McMd::PairList, DdMd::DihedralPotentialImpl< Interaction >, Util::AutoCorr< Data, Product >, Simp::MultiHarmonicDihedral, Util::AutoCorr< double, double >, Util::AutoCorr< std::complex< double >, std::complex< double > >, Util::Average, Simp::FeneBond, McMd::Analyzer, McMd::RadiusGyration, DdMd::BondPotentialImpl< Interaction >, DdMd::ExternalPotentialImpl< Interaction >, McMd::IntraPairAutoCorr, Simp::CosineDihedral, McMd::StructureFactor, McMd::MdPairPotentialImpl< Interaction >, Util::MeanSqDispArray< Data >, Simp::HarmonicBond, Simp::SphericalTabulatedExternal, McMd::CompositionProfile, DdMd::OrderParamNucleation, DdMd::Domain, Util::MeanSqDispArray< Util::Vector >, Simp::CosineAngle, Simp::HarmonicAngle, Simp::LJPair, McMd::IntraBondTensorAutoCorr< SystemType >, McMd::IntraBondTensorAutoCorr< MdSystem >, McMd::IntraBondTensorAutoCorr< McSystem >, Simp::CosineSqAngle, McMd::MdEwaldPotential, McMd::MdSpmePotential, McMd::MdEwaldPairPotentialImpl< Interaction >, Simp::HarmonicL0Bond, Util::Distribution, Util::TensorAverage, Simp::EwaldInteraction, Util::SymmTensorAverage, Util::Random, Simp::DpdPair, Util::IntDistribution, McMd::Command, DdMd::AnglePotentialImpl< Interaction >, McMd::NphIntegrator, McMd::Perturbation, McMd::DihedralPotentialImpl< Interaction >, DdMd::TrajectoryWriter, McMd::AnglePotentialImpl< Interaction >, McMd::ExternalPotentialImpl< Interaction >, McMd::McMuExchange, McMd::NvtDpdVvIntegrator, McMd::BondPotentialImpl< Interaction >, DdMd::SymmTensorAverageAnalyzer, DdMd::TensorAverageAnalyzer, Util::RadialDistribution, Simp::EnergyEnsemble, McMd::ClusterHistogram, McMd::RDF, McMd::MdMove, McMd::NvtNhIntegrator, DdMd::AverageAnalyzer, Simp::BoundaryEnsemble, McMd::McNVTChemicalPotential, McMd::NvtLangevinIntegrator, DdMd::EnergyAnalyzer, DdMd::ConfigWriter, McMd::McEnergyAnalyzer, McMd::MdEnergyAnalyzer, McMd::MdPairEnergyCoefficients, McMd::IntraBondStressAutoCorr< SystemType >, McMd::LinearRouseAutoCorr, McMd::CfbLinear, McMd::IntraBondStressAutoCorr< MdSystem >, McMd::IntraBondStressAutoCorr< McSystem >, McMd::BennettsMethod, McMd::DpdMove, McMd::McPairPotentialImpl< Interaction >, DdMd::NvtLangevinIntegrator, McMd::McMove, McMd::McMoveManager, McMd::RingRouseAutoCorr, McMd::HybridNphMdMove, McMd::McVirialStressTensorAverage, McMd::MdVirialStressTensorAverage, DdMd::AutoCorrAnalyzer< Data, Product >, DdMd::AutoCorrAnalyzer< Tensor, double >, McMd::ComMSD, McMd::ConfigWriter, DdMd::LogEnergy, DdMd::VirialStressTensorAverage, McMd::HybridMdMove, McMd::RingTetraRebridgeMove, McMd::McPairEnergyAverage, McMd::PressureAverage< SystemType >, McMd::StressAutoCorr< SystemType >, McMd::HarmonicCvBias, McMd::CfbRebridgeBase, McMd::CfbReptateMove, McMd::LinearSG, DdMd::OutputPairEnergies, DdMd::OutputPressure, DdMd::StressAutoCorr, DdMd::VirialStressTensor, McMd::PressureAverage< MdSystem >, McMd::PressureAverage< McSystem >, McMd::StressAutoCorr< MdSystem >, McMd::StressTensorAverage< SystemType >, McMd::LinearCvBias, McMd::EndSwapMove, McMd::CfbRingRebridgeMove, McMd::HomopolymerSG, DdMd::ExternalEnergyAverage, DdMd::OutputEnergy, DdMd::OutputTemperature, DdMd::PairEnergyAverage, DdMd::OutputBoxdim, DdMd::Integrator, McMd::CfbReptationMove, DdMd::OutputStressTensor, DdMd::NptIntegrator, McMd::AnalyzerManager, McMd::TypeDistribution, McMd::BondLengthDist, McMd::CfbRebridgeMove, DdMd::AnalyzerManager, DdMd::PairEnergyAnalyzer, McMd::CfbLinearEndMove, DdMd::NveIntegrator, Util::AutoCorrelation< Data, Product >, McMd::SemiGrandDistribution, McMd::AtomMSD, McMd::RigidDisplaceMove, McMd::CfbEndMove, McMd::RingOctaRebridgeMove, Util::AutoCorrelation< Tensor, double >, Util::AutoCorrelation< Util::Tensor, double >, McMd::McEnergyOutput, McMd::AverageAnalyzer< SystemType >, McMd::CfbDoubleRebridgeMove, DdMd::NvtIntegrator, McMd::AverageAnalyzer< McSystem >, McMd::MdEnergyOutput, McMd::MdKineticEnergyAverage, McMd::BoundaryAverage, McMd::NveVvIntegrator, DdMd::DdMdGroupTrajectoryWriter, DdMd::NphIntegrator, Simp::Homopolymer, McMd::MdPotentialEnergyAverage, McMd::PerturbDerivative, McMd::AtomDisplaceMove, McMd::LammpsDumpWriter, McMd::TrajectoryWriter, McMd::HomopolymerSemiGrandMove, Simp::HomoRing, Simp::Diblock, Simp::Multiblock, and Simp::Point.

Definition at line 70 of file ParamComponent.h.

virtual void Util::ParamComponent::resetParam ( )

inlinevirtual

Nontrivial implementation provided by ParamComposite subclass.

The default implementation is empty. This default is used by all leaf nodes (all other than ParamComposite and subclasses).

Reimplemented in Util::ParamComposite, Util::Begin, and Util::End.

Definition at line 79 of file ParamComponent.h.

References echo(), indent(), initStatic(), ParamComponent(), serialize(), setEcho(), and setIndent().

void Util::ParamComponent::setIndent	(	const ParamComponent &	parent,
		bool	next = true
	)

Set indent level.

If next=true (default) set indent level one higher than that of parent. If next=false, set indent level the same as parent.

Parameters

parent	parent ParamComponent object
next	If true, set level one higher than for parent.

Definition at line 48 of file ParamComponent.cpp.

References indent().

Referenced by Util::Factory< Data >::readObject(), Simp::CompensatedPair< BarePair, LinkPotential >::readParameters(), Simp::CompositeBond< BareBond, BarePair >::readParameters(), resetParam(), and Util::ParamComposite::setParent().

std::string Util::ParamComponent::indent

(

)

const

Return indent string for this object (string of spaces).

Definition at line 42 of file ParamComponent.cpp.

Referenced by Util::Parameter::load(), Util::ParamComposite::loadOptional(), Util::Begin::readParam(), Util::Parameter::readParam(), resetParam(), setIndent(), Util::CArrayParam< Type >::writeParam(), Util::DArrayParam< Type >::writeParam(), Util::FArrayParam< Type, N >::writeParam(), Util::End::writeParam(), Util::DSymmMatrixParam< Type >::writeParam(), Util::Begin::writeParam(), Util::DMatrixParam< Type >::writeParam(), Util::ScalarParam< Type >::writeParam(), Util::CArray2DParam< Type >::writeParam(), and Simp::Species::writeStructure().

template<class Archive >

void Util::ParamComponent::serialize	(	Archive &	ar,
		const unsigned int	version
	)

Serialize this ParamComponent as a string.

Parameters

ar	saving or loading archive
version	version id for archive

Definition at line 177 of file ParamComponent.h.

References readParam(), and writeParam().

Referenced by resetParam(), and Tools::Species::size().

void Util::ParamComponent::initStatic ( )

static

Initialize static echo member to false.

Definition at line 77 of file ParamComponent.cpp.

Referenced by Util::initStatic(), and resetParam().

void Util::ParamComponent::setEcho ( bool  echo = true )

static

Enable or disable echoing for all subclasses of ParamComponent.

When echoing is enabled, all parameters are echoed to a log file immediately after being read. This is useful as an aid to debugging the parameter file, by showing where the error occurred.

Parameters

echo	set true to enable echoing, false to disable.

Definition at line 62 of file ParamComponent.cpp.

References echo().

Referenced by resetParam(), Tools::Processor::setOptions(), McMd::MdSimulation::setOptions(), McMd::McSimulation::setOptions(), and DdMd::Simulation::setOptions().

bool Util::ParamComponent::echo ( )

static

Get echo parameter.

Returns

true if echoing is enabled, false if disabled.

Definition at line 68 of file ParamComponent.cpp.

Referenced by Util::Manager< Data >::endReadManager(), Util::Parameter::load(), Util::ParamComposite::load(), Util::ParamComposite::loadOptional(), Util::Factory< Data >::readObject(), Util::Blank::readParam(), Util::End::readParam(), Util::Begin::readParam(), Util::Parameter::readParam(), resetParam(), and setEcho().

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The documentation for this class was generated from the following files:

• ParamComponent.h
• ParamComponent.cpp