DdMd::NptIntegrator Member List

This is the complete list of members for DdMd::NptIntegrator, including all inherited members.

add(std::istream &in, const char *label, Type &value, bool isRequired=true)	Util::ParamComposite	protected
addBegin(const char *label)	Util::ParamComposite
addBlank()	Util::ParamComposite
addCArray(std::istream &in, const char *label, Type *value, int n, bool isRequired=true)	Util::ParamComposite	protected
addCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np, bool isRequired=true)	Util::ParamComposite	protected
addComponent(ParamComponent &param, bool isLeaf=true)	Util::ParamComposite	protected
addDArray(std::istream &in, const char *label, DArray< Type > &array, int n, bool isRequired=true)	Util::ParamComposite	protected
addDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired=true)	Util::ParamComposite	protected
addEnd()	Util::ParamComposite
addFArray(std::istream &in, const char *label, FArray< Type, N > &array, bool isRequired=true)	Util::ParamComposite	protected
addParamComposite(ParamComposite &child, bool next=true)	Util::ParamComposite
anglePotential()	DdMd::SimulationAccess	inline
angleStorage()	DdMd::SimulationAccess	inline
atomStorage()	DdMd::SimulationAccess	inline
atomType(int i)	DdMd::SimulationAccess	inline
bondPotential()	DdMd::SimulationAccess	inline
bondStorage()	DdMd::SimulationAccess	inline
boundary()	DdMd::SimulationAccess	inline
boundaryEnsemble()	DdMd::SimulationAccess	inline
className() const	Util::ParamComposite	inline
clear()	DdMd::Integrator	virtual
clearCommunicator()	Util::MpiFileIo
computeForces()	DdMd::Integrator	protected
computeForcesAndVirial()	DdMd::Integrator	protected
dihedralPotential()	DdMd::SimulationAccess	inline
dihedralStorage()	DdMd::SimulationAccess	inline
domain()	DdMd::SimulationAccess	inline
echo()	Util::ParamComponent	static
energyEnsemble()	DdMd::SimulationAccess	inline
exchanger()	DdMd::SimulationAccess	inline
externalPotential()	DdMd::SimulationAccess	inline
fileMaster()	DdMd::SimulationAccess	inline
hasExternal()	DdMd::SimulationAccess	inline
hasIoCommunicator() const	Util::MpiFileIo	inline
IArchive typedef	Util::Serializable
indent() const	Util::ParamComponent
initDynamicalState()	DdMd::NptIntegrator	protectedvirtual
initStatic()	Util::ParamComponent	static
integrateStep1()	DdMd::NptIntegrator	protectedvirtual
integrateStep2()	DdMd::NptIntegrator	protectedvirtual
Integrator(Simulation &simulation)	DdMd::Integrator
ioCommunicator() const	Util::MpiFileIo	inline
isActive() const	Util::ParamComposite	inline
isExchangeNeeded(double skin)	DdMd::Integrator	protected
isIoProcessor() const	Util::MpiFileIo	inline
isRequired() const	Util::ParamComposite	inline
isSetup() const	DdMd::Integrator	inlineprotected
iStep() const	DdMd::Integrator	inline
iStep_	DdMd::Integrator	protected
load(Serializable::IArchive &ar)	Util::ParamComposite	virtual
loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n, bool isRequired)	Util::ParamComposite
loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n)	Util::ParamComposite	inline
loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np, bool isRequired)	Util::ParamComposite
loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np)	Util::ParamComposite
loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n, bool isRequired)	Util::ParamComposite
loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n)	Util::ParamComposite	inline
loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired)	Util::ParamComposite
loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n)	Util::ParamComposite	inline
loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n, bool isRequired)	Util::ParamComposite
loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n)	Util::ParamComposite	inline
loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array, bool isRequired)	Util::ParamComposite
loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array)	Util::ParamComposite	inline
loadOptional(Serializable::IArchive &ar)	Util::ParamComposite	virtual
loadParamComposite(Serializable::IArchive &ar, ParamComposite &child, bool next=true)	Util::ParamComposite
loadParamCompositeOptional(Serializable::IArchive &ar, ParamComposite &child, bool next=true)	Util::ParamComposite
loadParameter(Serializable::IArchive &ar, const char *label, Type &value, bool isRequired)	Util::ParamComposite
loadParameter(Serializable::IArchive &ar, const char *label, Type &value)	Util::ParamComposite	inline
loadParameters(Serializable::IArchive &ar)	DdMd::NptIntegrator	virtual
maskedPairPolicy() const	DdMd::SimulationAccess	inline
MpiFileIo()	Util::MpiFileIo
MpiFileIo(const MpiFileIo &other)	Util::MpiFileIo
nAngleType()	DdMd::SimulationAccess	inline
nAtomType()	DdMd::SimulationAccess	inline
nBondType()	DdMd::SimulationAccess	inline
nDihedralType()	DdMd::SimulationAccess	inline
NptIntegrator(Simulation &simulation)	DdMd::NptIntegrator
OArchive typedef	Util::Serializable
outputStatistics(std::ostream &out)	DdMd::Integrator	virtual
pairPotential()	DdMd::SimulationAccess	inline
ParamComponent()	Util::ParamComponent	protected
ParamComponent(const ParamComponent &other)	Util::ParamComponent	protected
ParamComposite()	Util::ParamComposite
ParamComposite(const ParamComposite &other)	Util::ParamComposite
ParamComposite(int capacity)	Util::ParamComposite
random()	DdMd::SimulationAccess	inline
read(std::istream &in, const char *label, Type &value)	Util::ParamComposite
readBegin(std::istream &in, const char *label, bool isRequired=true)	Util::ParamComposite
readBlank(std::istream &in)	Util::ParamComposite
readCArray(std::istream &in, const char *label, Type *value, int n)	Util::ParamComposite	inline
readCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np)	Util::ParamComposite	inline
readDArray(std::istream &in, const char *label, DArray< Type > &array, int n)	Util::ParamComposite	inline
readDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n)	Util::ParamComposite	inline
readDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n)	Util::ParamComposite	inline
readEnd(std::istream &in)	Util::ParamComposite
readFArray(std::istream &in, const char *label, FArray< Type, N > &array)	Util::ParamComposite	inline
readOptional(std::istream &in, const char *label, Type &value)	Util::ParamComposite	inline
readOptionalCArray(std::istream &in, const char *label, Type *value, int n)	Util::ParamComposite	inline
readOptionalCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np)	Util::ParamComposite	inline
readOptionalDArray(std::istream &in, const char *label, DArray< Type > &array, int n)	Util::ParamComposite	inline
readOptionalDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n)	Util::ParamComposite	inline
readOptionalDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n)	Util::ParamComposite	inline
readOptionalFArray(std::istream &in, const char *label, FArray< Type, N > &array)	Util::ParamComposite	inline
readParam(std::istream &in)	Util::ParamComposite	virtual
readParamComposite(std::istream &in, ParamComposite &child, bool next=true)	Util::ParamComposite
readParamCompositeOptional(std::istream &in, ParamComposite &child, bool next=true)	Util::ParamComposite
readParameters(std::istream &in)	DdMd::NptIntegrator	virtual
readParamOptional(std::istream &in)	Util::ParamComposite	virtual
resetParam()	Util::ParamComposite	virtual
reverseUpdateFlag() const	DdMd::SimulationAccess	inline
run(int nStep)	DdMd::TwoStepIntegrator	virtual
save(Serializable::OArchive &ar)	DdMd::NptIntegrator	virtual
saveFileName() const	DdMd::Integrator	inlineprotected
saveInterval() const	DdMd::Integrator	inlineprotected
saveOptional(Serializable::OArchive &ar)	Util::ParamComposite
serialize(Archive &ar, const unsigned int version)	Util::ParamComponent
setClassName(const char *className)	Util::ParamComposite	protected
setEcho(bool echo=true)	Util::ParamComponent	static
setIndent(const ParamComponent &parent, bool next=true)	Util::ParamComponent
setIoCommunicator(MPI::Intracomm &communicator)	Util::MpiFileIo
setIsActive(bool isActive)	Util::ParamComposite	protected
setIsRequired(bool isRequired)	Util::ParamComposite	protected
setIsSetup()	DdMd::Integrator	inlineprotected
setParent(ParamComponent &param, bool next=true)	Util::ParamComposite	protected
setup()	DdMd::NptIntegrator	protectedvirtual
setupAtoms()	DdMd::Integrator	protected
simulation()	DdMd::SimulationAccess	inline
SimulationAccess(Simulation &simulation)	DdMd::SimulationAccess
time() const	DdMd::Integrator
TimeId enum name	DdMd::Integrator	protected
TwoStepIntegrator(Simulation &simulation)	DdMd::TwoStepIntegrator
writeParam(std::ostream &out)	Util::ParamComposite	virtual
~Integrator()	DdMd::Integrator
~NptIntegrator()	DdMd::NptIntegrator
~ParamComponent()	Util::ParamComponent	virtual
~ParamComposite()	Util::ParamComposite	virtual
~Serializable()	Util::Serializable	inlinevirtual
~SimulationAccess()	DdMd::SimulationAccess
~TwoStepIntegrator()	DdMd::TwoStepIntegrator