Simpatico  v1.10
DdMd::Simulation Member List

This is the complete list of members for DdMd::Simulation, including all inherited members.

add(std::istream &in, const char *label, Type &value, bool isRequired=true)Util::ParamCompositeprotected
addBegin(const char *label)Util::ParamComposite
addBlank()Util::ParamComposite
addCArray(std::istream &in, const char *label, Type *value, int n, bool isRequired=true)Util::ParamCompositeprotected
addCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np, bool isRequired=true)Util::ParamCompositeprotected
addComponent(ParamComponent &param, bool isLeaf=true)Util::ParamCompositeprotected
addDArray(std::istream &in, const char *label, DArray< Type > &array, int n, bool isRequired=true)Util::ParamCompositeprotected
addDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired=true)Util::ParamCompositeprotected
addEnd()Util::ParamComposite
addFArray(std::istream &in, const char *label, FArray< Type, N > &array, bool isRequired=true)Util::ParamCompositeprotected
addParamComposite(ParamComposite &child, bool next=true)Util::ParamComposite
analyzerManager()DdMd::Simulationinline
angleFactory()DdMd::Simulation
anglePotential() const DdMd::Simulationinline
anglePotential()DdMd::Simulationinline
angleStorage()DdMd::Simulationinline
angleStyle() const DdMd::Simulation
atomStorage()DdMd::Simulationinline
atomType(int i)DdMd::Simulationinline
bondFactory()DdMd::Simulation
bondPotential() const DdMd::Simulationinline
bondPotential()DdMd::Simulationinline
bondStorage()DdMd::Simulationinline
bondStyle() const DdMd::Simulation
boundary()DdMd::Simulationinline
boundaryEnsemble()DdMd::Simulationinline
buffer()DdMd::Simulationinline
className() const Util::ParamCompositeinline
clearCommunicator()Util::MpiFileIo
computeForces()DdMd::Simulation
computeForcesAndVirial()DdMd::Simulation
computeKineticEnergy()DdMd::Simulation
computeKineticStress()DdMd::Simulation
computePairEnergies()DdMd::Simulation
computePotentialEnergies()DdMd::Simulation
computeVirialStress()DdMd::Simulation
configIoFactory()DdMd::Simulation
dihedralFactory()DdMd::Simulation
dihedralPotential() const DdMd::Simulationinline
dihedralPotential()DdMd::Simulationinline
dihedralStorage()DdMd::Simulationinline
dihedralStyle() const DdMd::Simulation
domain()DdMd::Simulationinline
echo()Util::ParamComponentstatic
energyEnsemble()DdMd::Simulationinline
exchanger()DdMd::Simulationinline
exchangeSignal()DdMd::Simulationinline
externalFactory()DdMd::Simulation
externalPotential() const DdMd::Simulationinline
externalPotential()DdMd::Simulationinline
externalStyle() const DdMd::Simulation
fileMaster()DdMd::Simulationinline
hasExternal()DdMd::Simulationinline
hasIoCommunicator() const Util::MpiFileIoinline
IArchive typedefUtil::Serializable
indent() const Util::ParamComponent
initStatic()Util::ParamComponentstatic
integrator()DdMd::Simulationinline
integratorFactory()DdMd::Simulation
ioCommunicator() const Util::MpiFileIoinline
isActive() const Util::ParamCompositeinline
isIoProcessor() const Util::MpiFileIoinline
isRequired() const Util::ParamCompositeinline
isValid()DdMd::Simulation
kineticEnergy()DdMd::Simulation
kineticPressure() const DdMd::Simulation
kineticStress() const DdMd::Simulation
load(const std::string &filename)DdMd::Simulation
Util::ParamComposite::load(Serializable::IArchive &ar)Util::ParamCompositevirtual
loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n, bool isRequired)Util::ParamComposite
loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n)Util::ParamCompositeinline
loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np, bool isRequired)Util::ParamComposite
loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np)Util::ParamComposite
loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n, bool isRequired)Util::ParamComposite
loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n)Util::ParamCompositeinline
loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired)Util::ParamComposite
loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n)Util::ParamCompositeinline
loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n, bool isRequired)Util::ParamComposite
loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n)Util::ParamCompositeinline
loadEnsembles(Serializable::IArchive &ar)DdMd::Simulationprotected
loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array, bool isRequired)Util::ParamComposite
loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array)Util::ParamCompositeinline
loadFileMaster(Serializable::IArchive &ar)DdMd::Simulationprotected
loadOptional(Serializable::IArchive &ar)Util::ParamCompositevirtual
loadParamComposite(Serializable::IArchive &ar, ParamComposite &child, bool next=true)Util::ParamComposite
loadParamCompositeOptional(Serializable::IArchive &ar, ParamComposite &child, bool next=true)Util::ParamComposite
loadParameter(Serializable::IArchive &ar, const char *label, Type &value, bool isRequired)Util::ParamComposite
loadParameter(Serializable::IArchive &ar, const char *label, Type &value)Util::ParamCompositeinline
loadParameters(Serializable::IArchive &ar)DdMd::Simulationvirtual
loadPotentialStyles(Serializable::IArchive &ar)DdMd::Simulationprotected
maskedPairPolicy() const DdMd::Simulationinline
modifierManager()DdMd::Simulationinline
modifySignal()DdMd::Simulationinline
MpiFileIo()Util::MpiFileIo
MpiFileIo(const MpiFileIo &other)Util::MpiFileIo
nAngleType()DdMd::Simulationinline
nAtomType()DdMd::Simulationinline
nBondType()DdMd::Simulationinline
nDihedralType()DdMd::Simulationinline
OArchive typedefUtil::Serializable
outputOptions(std::ostream &out) const DdMd::Simulation
pairEnergies() const DdMd::Simulation
pairFactory()DdMd::Simulation
pairPotential() const DdMd::Simulationinline
pairPotential()DdMd::Simulationinline
pairStyle() const DdMd::Simulation
ParamComponent()Util::ParamComponentprotected
ParamComponent(const ParamComponent &other)Util::ParamComponentprotected
ParamComposite()Util::ParamComposite
ParamComposite(const ParamComposite &other)Util::ParamComposite
ParamComposite(int capacity)Util::ParamComposite
positionSignal()DdMd::Simulationinline
potentialEnergy() const DdMd::Simulation
random()DdMd::Simulationinline
read(std::istream &in, const char *label, Type &value)Util::ParamComposite
readBegin(std::istream &in, const char *label, bool isRequired=true)Util::ParamComposite
readBlank(std::istream &in)Util::ParamComposite
readCArray(std::istream &in, const char *label, Type *value, int n)Util::ParamCompositeinline
readCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np)Util::ParamCompositeinline
readCommands()DdMd::Simulation
readCommands(std::istream &in)DdMd::Simulation
readConfig(const std::string &filename)DdMd::Simulation
readDArray(std::istream &in, const char *label, DArray< Type > &array, int n)Util::ParamCompositeinline
readDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n)Util::ParamCompositeinline
readDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n)Util::ParamCompositeinline
readEnd(std::istream &in)Util::ParamComposite
readEnsembles(std::istream &in)DdMd::Simulationprotected
readFArray(std::istream &in, const char *label, FArray< Type, N > &array)Util::ParamCompositeinline
readFileMaster(std::istream &in)DdMd::Simulationprotected
readOptional(std::istream &in, const char *label, Type &value)Util::ParamCompositeinline
readOptionalCArray(std::istream &in, const char *label, Type *value, int n)Util::ParamCompositeinline
readOptionalCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np)Util::ParamCompositeinline
readOptionalDArray(std::istream &in, const char *label, DArray< Type > &array, int n)Util::ParamCompositeinline
readOptionalDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n)Util::ParamCompositeinline
readOptionalDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n)Util::ParamCompositeinline
readOptionalFArray(std::istream &in, const char *label, FArray< Type, N > &array)Util::ParamCompositeinline
readParam()DdMd::Simulationvirtual
readParam(std::istream &in)DdMd::Simulationvirtual
readParamComposite(std::istream &in, ParamComposite &child, bool next=true)Util::ParamComposite
readParamCompositeOptional(std::istream &in, ParamComposite &child, bool next=true)Util::ParamComposite
readParameters(std::istream &in)DdMd::Simulationvirtual
readParamOptional(std::istream &in)Util::ParamCompositevirtual
readPotentialStyles(std::istream &in)DdMd::Simulationprotected
removeDriftVelocity()DdMd::Simulation
resetParam()Util::ParamCompositevirtual
reverseUpdateFlag() const DdMd::Simulationinline
save(const std::string &filename)DdMd::Simulation
save(Serializable::OArchive &ar)DdMd::Simulationvirtual
saveEnsembles(Serializable::OArchive &ar)DdMd::Simulationprotected
saveFileMaster(Serializable::OArchive &ar)DdMd::Simulationprotected
saveOptional(Serializable::OArchive &ar)Util::ParamComposite
savePotentialStyles(Serializable::OArchive &ar)DdMd::Simulationprotected
serialize(Archive &ar, const unsigned int version)Util::ParamComponent
setBoltzmannVelocities(double temperature)DdMd::Simulation
setClassName(const char *className)Util::ParamCompositeprotected
setConfigIo(std::string &classname)DdMd::Simulation
setEcho(bool echo=true)Util::ParamComponentstatic
setIndent(const ParamComponent &parent, bool next=true)Util::ParamComponent
setIoCommunicator(MPI::Intracomm &communicator)Util::MpiFileIo
setIsActive(bool isActive)Util::ParamCompositeprotected
setIsRequired(bool isRequired)Util::ParamCompositeprotected
setOptions(int argc, char *const *argv)DdMd::Simulation
setParent(ParamComponent &param, bool next=true)Util::ParamCompositeprotected
setReverseUpdateFlag(bool reverseUpdateFlag)DdMd::Simulation
Simulation(MPI::Intracomm &communicator=MPI::COMM_WORLD)DdMd::Simulation
unsetKineticEnergy()DdMd::Simulation
unsetKineticStress()DdMd::Simulation
unsetPotentialEnergies()DdMd::Simulation
unsetVirialStress()DdMd::Simulation
velocitySignal()DdMd::Simulationinline
virialPressure() const DdMd::Simulation
virialStress() const DdMd::Simulation
writeConfig(const std::string &filename)DdMd::Simulation
writeParam(std::ostream &out)Util::ParamCompositevirtual
zeroForces()DdMd::Simulation
~ParamComponent()Util::ParamComponentvirtual
~ParamComposite()Util::ParamCompositevirtual
~Serializable()Util::Serializableinlinevirtual
~Simulation()DdMd::Simulation
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