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Simpatico
v1.10
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This is the complete list of members for McMd::Simulation, including all inherited members.
| add(std::istream &in, const char *label, Type &value, bool isRequired=true) | Util::ParamComposite | protected |
| addBegin(const char *label) | Util::ParamComposite | |
| addBlank() | Util::ParamComposite | |
| addCArray(std::istream &in, const char *label, Type *value, int n, bool isRequired=true) | Util::ParamComposite | protected |
| addCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np, bool isRequired=true) | Util::ParamComposite | protected |
| addComponent(ParamComponent ¶m, bool isLeaf=true) | Util::ParamComposite | protected |
| addDArray(std::istream &in, const char *label, DArray< Type > &array, int n, bool isRequired=true) | Util::ParamComposite | protected |
| addDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired=true) | Util::ParamComposite | protected |
| addEnd() | Util::ParamComposite | |
| addFArray(std::istream &in, const char *label, FArray< Type, N > &array, bool isRequired=true) | Util::ParamComposite | protected |
| addParamComposite(ParamComposite &child, bool next=true) | Util::ParamComposite | |
| allocateMoleculeSet(Util::ArraySet< Molecule > &set, int speciesId) const | McMd::Simulation | |
| analyzerFactory() | McMd::Simulation | |
| analyzerManager() | McMd::Simulation | inlineprotected |
| angleCapacity() const | McMd::Simulation | inline |
| atomCapacity() const | McMd::Simulation | inline |
| atomType(int i) const | McMd::Simulation | inline |
| atomTypes() const | McMd::Simulation | inline |
| bondCapacity() const | McMd::Simulation | inline |
| className() const | Util::ParamComposite | inline |
| clearCommunicator() | Util::MpiFileIo | |
| commandManager() | McMd::Simulation | inlineprotected |
| communicator() | McMd::Simulation | inline |
| dihedralCapacity() const | McMd::Simulation | inline |
| echo() | Util::ParamComponent | static |
| fileMaster() | McMd::Simulation | inline |
| getMolecule(int speciesId) | McMd::Simulation | |
| hasCommunicator() const | McMd::Simulation | inline |
| hasCoulomb() const | McMd::Simulation | inline |
| hasExternal() const | McMd::Simulation | inline |
| hasIoCommunicator() const | Util::MpiFileIo | inline |
| hasSpecies() const | McMd::Simulation | inline |
| IArchive typedef | Util::Serializable | |
| indent() const | Util::ParamComponent | |
| initStatic() | Util::ParamComponent | static |
| ioCommunicator() const | Util::MpiFileIo | inline |
| isActive() const | Util::ParamComposite | inline |
| isIoProcessor() const | Util::MpiFileIo | inline |
| isRequired() const | Util::ParamComposite | inline |
| iStep() const | McMd::Simulation | inline |
| iStep_ | McMd::Simulation | protected |
| isValid() const | McMd::Simulation | virtual |
| load(Serializable::IArchive &ar) | Util::ParamComposite | virtual |
| loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n, bool isRequired) | Util::ParamComposite | |
| loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n) | Util::ParamComposite | inline |
| loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np, bool isRequired) | Util::ParamComposite | |
| loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np) | Util::ParamComposite | |
| loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n, bool isRequired) | Util::ParamComposite | |
| loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n) | Util::ParamComposite | inline |
| loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired) | Util::ParamComposite | |
| loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n) | Util::ParamComposite | inline |
| loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n, bool isRequired) | Util::ParamComposite | |
| loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n) | Util::ParamComposite | inline |
| loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array, bool isRequired) | Util::ParamComposite | |
| loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array) | Util::ParamComposite | inline |
| loadOptional(Serializable::IArchive &ar) | Util::ParamComposite | virtual |
| loadParamComposite(Serializable::IArchive &ar, ParamComposite &child, bool next=true) | Util::ParamComposite | |
| loadParamCompositeOptional(Serializable::IArchive &ar, ParamComposite &child, bool next=true) | Util::ParamComposite | |
| loadParameter(Serializable::IArchive &ar, const char *label, Type &value, bool isRequired) | Util::ParamComposite | |
| loadParameter(Serializable::IArchive &ar, const char *label, Type &value) | Util::ParamComposite | inline |
| loadParameters(Serializable::IArchive &ar) | McMd::Simulation | virtual |
| maskedPairPolicy() const | McMd::Simulation | inline |
| moleculeCapacity() const | McMd::Simulation | inline |
| MpiFileIo() | Util::MpiFileIo | |
| MpiFileIo(const MpiFileIo &other) | Util::MpiFileIo | |
| nAngleType() const | McMd::Simulation | inline |
| nAtomType() const | McMd::Simulation | inline |
| nBondType() const | McMd::Simulation | inline |
| nDihedralType() const | McMd::Simulation | inline |
| nLinkType() const | McMd::Simulation | inline |
| nSpecies() const | McMd::Simulation | |
| nSystem() const | McMd::Simulation | inline |
| nSystem_ | McMd::Simulation | protected |
| OArchive typedef | Util::Serializable | |
| outputOptions(std::ostream &out) const | McMd::Simulation | |
| ParamComponent() | Util::ParamComponent | protected |
| ParamComponent(const ParamComponent &other) | Util::ParamComponent | protected |
| ParamComposite() | Util::ParamComposite | |
| ParamComposite(const ParamComposite &other) | Util::ParamComposite | |
| ParamComposite(int capacity) | Util::ParamComposite | |
| random() | McMd::Simulation | inline |
| read(std::istream &in, const char *label, Type &value) | Util::ParamComposite | |
| readBegin(std::istream &in, const char *label, bool isRequired=true) | Util::ParamComposite | |
| readBlank(std::istream &in) | Util::ParamComposite | |
| readCArray(std::istream &in, const char *label, Type *value, int n) | Util::ParamComposite | inline |
| readCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np) | Util::ParamComposite | inline |
| readDArray(std::istream &in, const char *label, DArray< Type > &array, int n) | Util::ParamComposite | inline |
| readDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n) | Util::ParamComposite | inline |
| readDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n) | Util::ParamComposite | inline |
| readEnd(std::istream &in) | Util::ParamComposite | |
| readFArray(std::istream &in, const char *label, FArray< Type, N > &array) | Util::ParamComposite | inline |
| readOptional(std::istream &in, const char *label, Type &value) | Util::ParamComposite | inline |
| readOptionalCArray(std::istream &in, const char *label, Type *value, int n) | Util::ParamComposite | inline |
| readOptionalCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np) | Util::ParamComposite | inline |
| readOptionalDArray(std::istream &in, const char *label, DArray< Type > &array, int n) | Util::ParamComposite | inline |
| readOptionalDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n) | Util::ParamComposite | inline |
| readOptionalDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n) | Util::ParamComposite | inline |
| readOptionalFArray(std::istream &in, const char *label, FArray< Type, N > &array) | Util::ParamComposite | inline |
| readParam(std::istream &in) | Util::ParamComposite | virtual |
| readParamComposite(std::istream &in, ParamComposite &child, bool next=true) | Util::ParamComposite | |
| readParamCompositeOptional(std::istream &in, ParamComposite &child, bool next=true) | Util::ParamComposite | |
| readParameters(std::istream &in) | McMd::Simulation | virtual |
| readParamOptional(std::istream &in) | Util::ParamComposite | virtual |
| resetParam() | Util::ParamComposite | virtual |
| returnMolecule(Molecule &molecule) | McMd::Simulation | |
| save(Serializable::OArchive &ar) | McMd::Simulation | virtual |
| saveOptional(Serializable::OArchive &ar) | Util::ParamComposite | |
| serialize(Archive &ar, const unsigned int version) | Util::ParamComponent | |
| setAnalyzerManager(AnalyzerManager *ptr) | McMd::Simulation | protected |
| setClassName(const char *className) | Util::ParamComposite | protected |
| setCommandManager(CommandManager *ptr) | McMd::Simulation | protected |
| setEcho(bool echo=true) | Util::ParamComponent | static |
| setIndent(const ParamComponent &parent, bool next=true) | Util::ParamComponent | |
| setIoCommunicator(MPI::Intracomm &communicator) | McMd::Simulation | virtual |
| setIoCommunicator() | McMd::Simulation | |
| setIsActive(bool isActive) | Util::ParamComposite | protected |
| setIsRequired(bool isRequired) | Util::ParamComposite | protected |
| setParent(ParamComponent ¶m, bool next=true) | Util::ParamComposite | protected |
| Simulation(MPI::Intracomm &communicator) | McMd::Simulation | |
| Simulation() | McMd::Simulation | |
| species(int i) | McMd::Simulation | |
| species(int i) const | McMd::Simulation | |
| speciesFactory() | McMd::Simulation | |
| writeParam(std::string filename) | McMd::Simulation | |
| Util::ParamComposite::writeParam(std::ostream &out) | Util::ParamComposite | virtual |
| ~ParamComponent() | Util::ParamComponent | virtual |
| ~ParamComposite() | Util::ParamComposite | virtual |
| ~Serializable() | Util::Serializable | inlinevirtual |
| ~Simulation() | McMd::Simulation | virtual |
1.8.11