Simpatico  v1.10
McMd::System Member List

This is the complete list of members for McMd::System, including all inherited members.

add(std::istream &in, const char *label, Type &value, bool isRequired=true)Util::ParamCompositeprotected
addBegin(const char *label)Util::ParamComposite
addBlank()Util::ParamComposite
addCArray(std::istream &in, const char *label, Type *value, int n, bool isRequired=true)Util::ParamCompositeprotected
addCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np, bool isRequired=true)Util::ParamCompositeprotected
addComponent(ParamComponent &param, bool isLeaf=true)Util::ParamCompositeprotected
addDArray(std::istream &in, const char *label, DArray< Type > &array, int n, bool isRequired=true)Util::ParamCompositeprotected
addDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired=true)Util::ParamCompositeprotected
addEnd()Util::ParamComposite
addFArray(std::istream &in, const char *label, FArray< Type, N > &array, bool isRequired=true)Util::ParamCompositeprotected
addMolecule(Molecule &molecule)McMd::System
addParamComposite(ParamComposite &child, bool next=true)Util::ParamComposite
allocateMoleculeSets()McMd::Systemprotected
angleFactory()McMd::System
angleStyle() const McMd::System
begin(int speciesId, MoleculeIterator &iterator)McMd::Systeminline
begin(int speciesId, ConstMoleculeIterator &iterator) const McMd::Systeminline
bondFactory()McMd::System
bondStyle() const McMd::System
boundary() const McMd::Systeminline
boundaryEnsemble() const McMd::Systeminline
className() const Util::ParamCompositeinline
clearCommunicator()Util::MpiFileIo
configIoFactory()McMd::System
ConstMoleculeIterator typedefMcMd::System
coulombFactory()McMd::System
coulombStyle() const McMd::System
dihedralFactory()McMd::System
dihedralStyle() const McMd::System
echo()Util::ParamComponentstatic
energyEnsemble() const McMd::Systeminline
expectPerturbation() const McMd::Systeminline
externalFactory()McMd::System
externalStyle() const McMd::System
fileMaster() const McMd::Systeminline
hasIoCommunicator() const Util::MpiFileIoinline
hasPerturbation() const McMd::Systeminline
hasReplicaMove() const McMd::Systeminline
IArchive typedefUtil::Serializable
id() const McMd::Systeminline
indent() const Util::ParamComponent
initStatic()Util::ParamComponentstatic
ioCommunicator() const Util::MpiFileIoinline
isActive() const Util::ParamCompositeinline
isCopy() const McMd::Systeminline
isEmpty() const McMd::System
isIoProcessor() const Util::MpiFileIoinline
isRequired() const Util::ParamCompositeinline
isValid() const McMd::Systemvirtual
linkFactory()McMd::System
linkMaster() const McMd::Systeminline
linkStyle() const McMd::System
load(Serializable::IArchive &ar)Util::ParamCompositevirtual
loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n, bool isRequired)Util::ParamComposite
loadCArray(Serializable::IArchive &ar, const char *label, Type *value, int n)Util::ParamCompositeinline
loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np, bool isRequired)Util::ParamComposite
loadCArray2D(Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np)Util::ParamComposite
loadConfig(Serializable::IArchive &ar)McMd::Systemvirtual
loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n, bool isRequired)Util::ParamComposite
loadDArray(Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n)Util::ParamCompositeinline
loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired)Util::ParamComposite
loadDMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n)Util::ParamCompositeinline
loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n, bool isRequired)Util::ParamComposite
loadDSymmMatrix(Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n)Util::ParamCompositeinline
loadEnsembles(Serializable::IArchive &ar)McMd::Systemprotected
loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array, bool isRequired)Util::ParamComposite
loadFArray(Serializable::IArchive &ar, const char *label, FArray< Type, N > &array)Util::ParamCompositeinline
loadFileMaster(Serializable::IArchive &ar)McMd::Systemprotected
loadLinkMaster(Serializable::IArchive &ar)McMd::Systemprotected
loadOptional(Serializable::IArchive &ar)Util::ParamCompositevirtual
loadParamComposite(Serializable::IArchive &ar, ParamComposite &child, bool next=true)Util::ParamComposite
loadParamCompositeOptional(Serializable::IArchive &ar, ParamComposite &child, bool next=true)Util::ParamComposite
loadParameter(Serializable::IArchive &ar, const char *label, Type &value, bool isRequired)Util::ParamComposite
loadParameter(Serializable::IArchive &ar, const char *label, Type &value)Util::ParamCompositeinline
loadParameters(Serializable::IArchive &ar)McMd::Systemvirtual
loadPerturbation(Serializable::IArchive &ar)McMd::Systemprotected
loadPotentialStyles(Serializable::IArchive &ar)McMd::Systemprotected
loadReplicaMove(Serializable::IArchive &ar)McMd::Systemprotected
maxBoundary() const McMd::Systemprotected
molecule(int speciesId, int moleculeId)McMd::Systeminline
moleculeId(const Molecule &molecule) const McMd::System
MoleculeIterator typedefMcMd::System
MoleculeSet typedefMcMd::System
MpiFileIo()Util::MpiFileIo
MpiFileIo(const MpiFileIo &other)Util::MpiFileIo
nAtom() const McMd::System
newDefaultConfigIo()McMd::Systemprotectedvirtual
newDefaultConfigIoFactory()McMd::Systemprotectedvirtual
newDefaultPerturbationFactory()McMd::Systeminlineprotectedvirtual
newDefaultTrajectoryReaderFactory()McMd::Systemprotectedvirtual
nMolecule(int speciesId) const McMd::Systeminline
OArchive typedefUtil::Serializable
pairFactory()McMd::System
pairStyle() const McMd::System
ParamComponent()Util::ParamComponentprotected
ParamComponent(const ParamComponent &other)Util::ParamComponentprotected
ParamComposite()Util::ParamComposite
ParamComposite(const ParamComposite &other)Util::ParamComposite
ParamComposite(int capacity)Util::ParamComposite
perturbation() const McMd::Systeminline
perturbationFactory()McMd::Systeminline
randomMolecule(int speciesId)McMd::System
read(std::istream &in, const char *label, Type &value)Util::ParamComposite
readBegin(std::istream &in, const char *label, bool isRequired=true)Util::ParamComposite
readBlank(std::istream &in)Util::ParamComposite
readCArray(std::istream &in, const char *label, Type *value, int n)Util::ParamCompositeinline
readCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np)Util::ParamCompositeinline
readConfig(std::istream &in)McMd::Systemvirtual
readConfig(std::string filename)McMd::System
readDArray(std::istream &in, const char *label, DArray< Type > &array, int n)Util::ParamCompositeinline
readDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n)Util::ParamCompositeinline
readDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n)Util::ParamCompositeinline
readEnd(std::istream &in)Util::ParamComposite
readEnsembles(std::istream &in)McMd::Systemprotected
readFArray(std::istream &in, const char *label, FArray< Type, N > &array)Util::ParamCompositeinline
readFileMaster(std::istream &in)McMd::Systemprotected
readLinkMaster(std::istream &in)McMd::Systemprotected
readOptional(std::istream &in, const char *label, Type &value)Util::ParamCompositeinline
readOptionalCArray(std::istream &in, const char *label, Type *value, int n)Util::ParamCompositeinline
readOptionalCArray2D(std::istream &in, const char *label, Type *value, int m, int n, int np)Util::ParamCompositeinline
readOptionalDArray(std::istream &in, const char *label, DArray< Type > &array, int n)Util::ParamCompositeinline
readOptionalDMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n)Util::ParamCompositeinline
readOptionalDSymmMatrix(std::istream &in, const char *label, DMatrix< Type > &matrix, int n)Util::ParamCompositeinline
readOptionalFArray(std::istream &in, const char *label, FArray< Type, N > &array)Util::ParamCompositeinline
readParam(std::istream &in)Util::ParamCompositevirtual
readParamComposite(std::istream &in, ParamComposite &child, bool next=true)Util::ParamComposite
readParamCompositeOptional(std::istream &in, ParamComposite &child, bool next=true)Util::ParamComposite
readParameters(std::istream &in)McMd::Systemvirtual
readParamOptional(std::istream &in)Util::ParamCompositevirtual
readPerturbation(std::istream &in)McMd::Systemprotected
readPotentialStyles(std::istream &in)McMd::Systemprotected
readReplicaMove(std::istream &in)McMd::Systemprotected
removeAllMolecules()McMd::System
removeMolecule(Molecule &molecule)McMd::System
replicaMove() const McMd::Systeminline
resetParam()Util::ParamCompositevirtual
save(Serializable::OArchive &ar)Util::ParamCompositevirtual
saveConfig(Serializable::OArchive &ar)McMd::System
saveEnsembles(Serializable::OArchive &ar)McMd::Systemprotected
saveFileMaster(Serializable::OArchive &ar)McMd::Systemprotected
saveLinkMaster(Serializable::OArchive &ar)McMd::Systemprotected
saveOptional(Serializable::OArchive &ar)Util::ParamComposite
saveParameters(Serializable::OArchive &ar)McMd::System
savePerturbation(Serializable::OArchive &ar)McMd::Systemprotected
savePotentialStyles(Serializable::OArchive &ar)McMd::Systemprotected
saveReplicaMove(Serializable::OArchive &ar)McMd::Systemprotected
serialize(Archive &ar, const unsigned int version)Util::ParamComponent
setClassName(const char *className)Util::ParamCompositeprotected
setConfigIo(std::string &classname)McMd::System
setEcho(bool echo=true)Util::ParamComponentstatic
setExpectPerturbation()McMd::System
setFileMaster(FileMaster &filemaster)McMd::System
setId(int Id)McMd::System
setIndent(const ParamComponent &parent, bool next=true)Util::ParamComponent
setIoCommunicator(MPI::Intracomm &communicator)Util::MpiFileIo
setIsActive(bool isActive)Util::ParamCompositeprotected
setIsRequired(bool isRequired)Util::ParamCompositeprotected
setParent(ParamComponent &param, bool next=true)Util::ParamCompositeprotected
setSimulation(Simulation &simulation)McMd::System
simulation() const McMd::Systeminline
subscribeMoleculeSetChange(MoleculeSetObserver &observer)McMd::Systeminline
System()McMd::System
System(const System &other)McMd::System
trajectoryReaderFactory()McMd::System
unsubscribeMoleculeSetChange(MoleculeSetObserver &observer)McMd::Systeminline
writeConfig(std::ostream &out)McMd::System
writeConfig(std::string filename)McMd::System
writeParam(std::ostream &out)Util::ParamCompositevirtual
~ParamComponent()Util::ParamComponentvirtual
~ParamComposite()Util::ParamCompositevirtual
~Serializable()Util::Serializableinlinevirtual
~System()McMd::Systemvirtual
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