Simpatico  v1.10
List of all members | Public Types | Public Member Functions | Static Public Member Functions
Simp::BoundaryEnsemble Class Reference

Detailed Description

Statistical ensemble for changes in the periodic unit cell size.

A boundary ensemble has a type, which can be rigid or isobaric, and stores a pressure if it is isobaric.

Definition at line 28 of file BoundaryEnsemble.h.

#include <BoundaryEnsemble.h>

Inheritance diagram for Simp::BoundaryEnsemble:
Util::ParamComposite Util::ParamComponent Util::Serializable Util::MpiFileIo

Public Types

- Public Types inherited from Util::Serializable
typedef BinaryFileOArchive OArchive
 Type of output archive used by save method. More...
 
typedef BinaryFileIArchive IArchive
 Type of input archive used by load method. More...
 

Public Member Functions

 BoundaryEnsemble (Type type=UNKNOWN)
 Constructor. More...
 
 ~BoundaryEnsemble ()
 Destructor. More...
 
void setPressure (double pressure)
 Set the pressure. More...
 
virtual void readParameters (std::istream &in)
 Read the type and (if necessary) pressure from file. More...
 
virtual void loadParameters (Serializable::IArchive &ar)
 Load internal state from an archive. More...
 
virtual void save (Serializable::OArchive &ar)
 Save internal state to an archive. More...
 
Accessors
bool isRigid () const
 Is this an Rigid ensemble? More...
 
bool isIsobaric () const
 Is this an Isobaric ensemble? More...
 
double pressure () const
 Get the target pressure. More...
 
- Public Member Functions inherited from Util::ParamComposite
 ParamComposite ()
 Constructor. More...
 
 ParamComposite (const ParamComposite &other)
 Copy constructor. More...
 
 ParamComposite (int capacity)
 Constructor. More...
 
virtual ~ParamComposite ()
 Virtual destructor. More...
 
void resetParam ()
 Resets ParamComposite to its empty state. More...
 
virtual void readParam (std::istream &in)
 Read the parameter file block. More...
 
virtual void readParamOptional (std::istream &in)
 Read optional parameter file block. More...
 
virtual void writeParam (std::ostream &out)
 Write all parameters to an output stream. More...
 
virtual void load (Serializable::IArchive &ar)
 Load all parameters from an input archive. More...
 
virtual void loadOptional (Serializable::IArchive &ar)
 Load an optional ParamComposite. More...
 
void saveOptional (Serializable::OArchive &ar)
 Saves isActive flag, and then calls save() iff isActive is true. More...
 
void readParamComposite (std::istream &in, ParamComposite &child, bool next=true)
 Add and read a required child ParamComposite. More...
 
void readParamCompositeOptional (std::istream &in, ParamComposite &child, bool next=true)
 Add and attempt to read an optional child ParamComposite. More...
 
template<typename Type >
ScalarParam< Type > & read (std::istream &in, const char *label, Type &value)
 Add and read a new required ScalarParam < Type > object. More...
 
template<typename Type >
ScalarParam< Type > & readOptional (std::istream &in, const char *label, Type &value)
 Add and read a new optional ScalarParam < Type > object. More...
 
template<typename Type >
CArrayParam< Type > & readCArray (std::istream &in, const char *label, Type *value, int n)
 Add and read a required C array parameter. More...
 
template<typename Type >
CArrayParam< Type > & readOptionalCArray (std::istream &in, const char *label, Type *value, int n)
 Add and read an optional C array parameter. More...
 
template<typename Type >
DArrayParam< Type > & readDArray (std::istream &in, const char *label, DArray< Type > &array, int n)
 Add and read a required DArray < Type > parameter. More...
 
template<typename Type >
DArrayParam< Type > & readOptionalDArray (std::istream &in, const char *label, DArray< Type > &array, int n)
 Add and read an optional DArray < Type > parameter. More...
 
template<typename Type , int N>
FArrayParam< Type, N > & readFArray (std::istream &in, const char *label, FArray< Type, N > &array)
 Add and read a required FArray < Type, N > array parameter. More...
 
template<typename Type , int N>
FArrayParam< Type, N > & readOptionalFArray (std::istream &in, const char *label, FArray< Type, N > &array)
 Add and read an optional FArray < Type, N > array parameter. More...
 
template<typename Type >
CArray2DParam< Type > & readCArray2D (std::istream &in, const char *label, Type *value, int m, int n, int np)
 Add and read a required CArray2DParam < Type > 2D C-array. More...
 
template<typename Type >
CArray2DParam< Type > & readOptionalCArray2D (std::istream &in, const char *label, Type *value, int m, int n, int np)
 Add and read an optional CArray2DParam < Type > 2D C-array parameter. More...
 
template<typename Type >
DMatrixParam< Type > & readDMatrix (std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n)
 Add and read a required DMatrix < Type > matrix parameter. More...
 
template<typename Type >
DMatrixParam< Type > & readOptionalDMatrix (std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n)
 Add and read an optional DMatrix < Type > matrix parameter. More...
 
template<typename Type >
DSymmMatrixParam< Type > & readDSymmMatrix (std::istream &in, const char *label, DMatrix< Type > &matrix, int n)
 Add and read a required symmetrix DMatrix. More...
 
template<typename Type >
DSymmMatrixParam< Type > & readOptionalDSymmMatrix (std::istream &in, const char *label, DMatrix< Type > &matrix, int n)
 Add and read an optional DMatrix matrix parameter. More...
 
BeginreadBegin (std::istream &in, const char *label, bool isRequired=true)
 Add and read a class label and opening bracket. More...
 
EndreadEnd (std::istream &in)
 Add and read the closing bracket. More...
 
BlankreadBlank (std::istream &in)
 Add and read a new Blank object, representing a blank line. More...
 
void loadParamComposite (Serializable::IArchive &ar, ParamComposite &child, bool next=true)
 Add and load a required child ParamComposite. More...
 
void loadParamCompositeOptional (Serializable::IArchive &ar, ParamComposite &child, bool next=true)
 Add and load an optional child ParamComposite if isActive. More...
 
template<typename Type >
ScalarParam< Type > & loadParameter (Serializable::IArchive &ar, const char *label, Type &value, bool isRequired)
 Add and load a new ScalarParam < Type > object. More...
 
template<typename Type >
ScalarParam< Type > & loadParameter (Serializable::IArchive &ar, const char *label, Type &value)
 Add and load new required ScalarParam < Type > object. More...
 
template<typename Type >
CArrayParam< Type > & loadCArray (Serializable::IArchive &ar, const char *label, Type *value, int n, bool isRequired)
 Add a C array parameter and load its elements. More...
 
template<typename Type >
CArrayParam< Type > & loadCArray (Serializable::IArchive &ar, const char *label, Type *value, int n)
 Add and load a required CArrayParam< Type > array parameter. More...
 
template<typename Type >
DArrayParam< Type > & loadDArray (Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n, bool isRequired)
 Add an load a DArray < Type > array parameter. More...
 
template<typename Type >
DArrayParam< Type > & loadDArray (Serializable::IArchive &ar, const char *label, DArray< Type > &array, int n)
 Add and load a required DArray< Type > array parameter. More...
 
template<typename Type , int N>
FArrayParam< Type, N > & loadFArray (Serializable::IArchive &ar, const char *label, FArray< Type, N > &array, bool isRequired)
 Add and load an FArray < Type, N > fixed-size array parameter. More...
 
template<typename Type , int N>
FArrayParam< Type, N > & loadFArray (Serializable::IArchive &ar, const char *label, FArray< Type, N > &array)
 Add and load a required FArray < Type > array parameter. More...
 
template<typename Type >
CArray2DParam< Type > & loadCArray2D (Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np, bool isRequired)
 Add and load a CArray2DParam < Type > C 2D array parameter. More...
 
template<typename Type >
CArray2DParam< Type > & loadCArray2D (Serializable::IArchive &ar, const char *label, Type *value, int m, int n, int np)
 Add and load a required < Type > matrix parameter. More...
 
template<typename Type >
DMatrixParam< Type > & loadDMatrix (Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired)
 Add and load a DMatrixParam < Type > matrix parameter. More...
 
template<typename Type >
DMatrixParam< Type > & loadDMatrix (Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int m, int n)
 Add and load a required DMatrixParam < Type > matrix parameter. More...
 
template<typename Type >
DSymmMatrixParam< Type > & loadDSymmMatrix (Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n, bool isRequired)
 Add and load a symmetric DSymmMatrixParam < Type > matrix parameter. More...
 
template<typename Type >
DSymmMatrixParam< Type > & loadDSymmMatrix (Serializable::IArchive &ar, const char *label, DMatrix< Type > &matrix, int n)
 Add and load a required DSymmMatrixParam < Type > matrix parameter. More...
 
void addParamComposite (ParamComposite &child, bool next=true)
 Add a child ParamComposite object to the format array. More...
 
BeginaddBegin (const char *label)
 Add a Begin object representing a class name and bracket. More...
 
EndaddEnd ()
 Add a closing bracket. More...
 
BlankaddBlank ()
 Create and add a new Blank object, representing a blank line. More...
 
std::string className () const
 Get class name string. More...
 
bool isRequired () const
 Is this ParamComposite required in the input file? More...
 
bool isActive () const
 Is this parameter active? More...
 
- Public Member Functions inherited from Util::ParamComponent
virtual ~ParamComponent ()
 Destructor. More...
 
void setIndent (const ParamComponent &parent, bool next=true)
 Set indent level. More...
 
std::string indent () const
 Return indent string for this object (string of spaces). More...
 
template<class Archive >
void serialize (Archive &ar, const unsigned int version)
 Serialize this ParamComponent as a string. More...
 
- Public Member Functions inherited from Util::Serializable
virtual ~Serializable ()
 Destructor. More...
 
- Public Member Functions inherited from Util::MpiFileIo
 MpiFileIo ()
 Constructor. More...
 
 MpiFileIo (const MpiFileIo &other)
 Copy constructor. More...
 
bool isIoProcessor () const
 Can this processor do file I/O ? More...
 
void setIoCommunicator (MPI::Intracomm &communicator)
 Set the communicator. More...
 
void clearCommunicator ()
 Clear (nullify) the communicator. More...
 
bool hasIoCommunicator () const
 Does this object have an associated MPI communicator? More...
 
MPI::Intracomm & ioCommunicator () const
 Get the MPI communicator by reference. More...
 

Static Public Member Functions

static void commitMpiType ()
 Commit associated MPI DataType. More...
 
- Static Public Member Functions inherited from Util::ParamComponent
static void initStatic ()
 Initialize static echo member to false. More...
 
static void setEcho (bool echo=true)
 Enable or disable echoing for all subclasses of ParamComponent. More...
 
static bool echo ()
 Get echo parameter. More...
 

Additional Inherited Members

- Protected Member Functions inherited from Util::ParamComposite
void setClassName (const char *className)
 Set class name string. More...
 
void setIsRequired (bool isRequired)
 Set or unset the isActive flag. More...
 
void setIsActive (bool isActive)
 Set or unset the isActive flag. More...
 
void setParent (ParamComponent &param, bool next=true)
 Set this to the parent of a child component. More...
 
void addComponent (ParamComponent &param, bool isLeaf=true)
 Add a new ParamComponent object to the format array. More...
 
template<typename Type >
ScalarParam< Type > & add (std::istream &in, const char *label, Type &value, bool isRequired=true)
 Add a new required ScalarParam < Type > object. More...
 
template<typename Type >
CArrayParam< Type > & addCArray (std::istream &in, const char *label, Type *value, int n, bool isRequired=true)
 Add (but do not read) a required C array parameter. More...
 
template<typename Type >
DArrayParam< Type > & addDArray (std::istream &in, const char *label, DArray< Type > &array, int n, bool isRequired=true)
 Add (but do not read) a DArray < Type > parameter. More...
 
template<typename Type , int N>
FArrayParam< Type, N > & addFArray (std::istream &in, const char *label, FArray< Type, N > &array, bool isRequired=true)
 Add (but do not read) a FArray < Type, N > array parameter. More...
 
template<typename Type >
CArray2DParam< Type > & addCArray2D (std::istream &in, const char *label, Type *value, int m, int n, int np, bool isRequired=true)
 Add (but do not read) a CArray2DParam < Type > 2D C-array. More...
 
template<typename Type >
DMatrixParam< Type > & addDMatrix (std::istream &in, const char *label, DMatrix< Type > &matrix, int m, int n, bool isRequired=true)
 Add and read a required DMatrix < Type > matrix parameter. More...
 
- Protected Member Functions inherited from Util::ParamComponent
 ParamComponent ()
 Constructor. More...
 
 ParamComponent (const ParamComponent &other)
 Copy constructor. More...
 

Member Enumeration Documentation

Enumeration of the allowed types of BoundaryEnsemble.

Definition at line 36 of file BoundaryEnsemble.h.

Constructor & Destructor Documentation

Simp::BoundaryEnsemble::BoundaryEnsemble ( Type  type = UNKNOWN)

Constructor.

Definition at line 21 of file BoundaryEnsemble.cpp.

References Util::ParamComposite::setClassName().

Simp::BoundaryEnsemble::~BoundaryEnsemble ( )

Destructor.

Definition at line 29 of file BoundaryEnsemble.cpp.

Member Function Documentation

void Simp::BoundaryEnsemble::setPressure ( double  pressure)

Set the pressure.

Definition at line 35 of file BoundaryEnsemble.cpp.

References isIsobaric(), pressure(), and UTIL_THROW.

void Simp::BoundaryEnsemble::readParameters ( std::istream &  in)
virtual

Read the type and (if necessary) pressure from file.

The type is specified in the input file by a string literal "rigid" or "isobaric".

Reimplemented from Util::ParamComposite.

Definition at line 46 of file BoundaryEnsemble.cpp.

References isIsobaric().

void Simp::BoundaryEnsemble::loadParameters ( Serializable::IArchive ar)
virtual

Load internal state from an archive.

Parameters
arinput/loading archive

Reimplemented from Util::ParamComposite.

Definition at line 57 of file BoundaryEnsemble.cpp.

References isIsobaric().

void Simp::BoundaryEnsemble::save ( Serializable::OArchive ar)
virtual

Save internal state to an archive.

Parameters
aroutput/saving archive

Reimplemented from Util::ParamComposite.

Definition at line 68 of file BoundaryEnsemble.cpp.

References isIsobaric().

Referenced by McMd::System::saveEnsembles().

bool Simp::BoundaryEnsemble::isRigid ( ) const
inline

Is this an Rigid ensemble?

Definition at line 145 of file BoundaryEnsemble.h.

bool Simp::BoundaryEnsemble::isIsobaric ( ) const
inline

Is this an Isobaric ensemble?

Definition at line 151 of file BoundaryEnsemble.h.

Referenced by loadParameters(), readParameters(), save(), and setPressure().

double Simp::BoundaryEnsemble::pressure ( ) const
inline
void Simp::BoundaryEnsemble::commitMpiType ( )
static

Commit associated MPI DataType.

Commit MPI Datatype.

Definition at line 115 of file BoundaryEnsemble.cpp.

References Util::MpiStructBuilder::addMember(), Util::MpiStructBuilder::commit(), and Util::MpiStructBuilder::setBase().


The documentation for this class was generated from the following files: