Here is a list of all documented class members with links to the class documentation for each member:

- c -

• c() : Util::XmlBase
• calculateAngleTypeId() : McMd::HomopolymerSG , McMd::LinearSG , Simp::Diblock , Simp::Homopolymer , Simp::HomoRing , Simp::Linear , Simp::Multiblock , Simp::Ring
• calculateAtomTypeId() : McMd::HomopolymerSG , McMd::LinearSG , Simp::Diblock , Simp::Homopolymer , Simp::HomoRing , Simp::Linear , Simp::Multiblock , Simp::Ring
• calculateBondTypeId() : McMd::HomopolymerSG , McMd::LinearSG , Simp::Diblock , Simp::Homopolymer , Simp::HomoRing , Simp::Linear , Simp::Multiblock , Simp::Ring
• calculateDihedralTypeId() : McMd::HomopolymerSG , McMd::LinearSG , Simp::Diblock , Simp::Homopolymer , Simp::HomoRing , Simp::Linear , Simp::Multiblock , Simp::Ring
• calculateForces() : McMd::MdSystem
• capacity() : DdMd::GroupStorage< N > , McMd::Atom , Simp::Species , Tools::AtomStorage , Tools::Species , Util::Array< Data > , Util::ArrayStack< Data > , Util::DSArray< Data > , Util::FArray< Data, Capacity > , Util::FPArray< Data, Capacity > , Util::FSArray< Data, Capacity > , Util::GArray< Data > , Util::GStack< Data > , Util::List< Data > , Util::ListArray< Data > , Util::MemoryIArchive , Util::MemoryOArchive , Util::PArray< Data > , Util::RingBuffer< Data > , Util::SSet< Data, Capacity >
• capacity1() : Util::Matrix< Data > , Util::RaggedMatrix< Data >
• capacity1_ : Util::Matrix< Data > , Util::RaggedMatrix< Data >
• capacity2() : Util::Matrix< Data > , Util::RaggedMatrix< Data >
• capacity2_ : Util::Matrix< Data > , Util::RaggedMatrix< Data >
• capacity_ : Util::Array< Data > , Util::DSArray< Data > , Util::PArray< Data > , Util::RaggedMatrix< Data >
• CardinalBSpline() : Util::CardinalBSpline
• cArray() : Util::Array< Data > , Util::FArray< Data, Capacity >
• CArray2DParam() : Util::CArray2DParam< Type >
• CArrayParam() : Util::CArrayParam< Type >
• CbEndMoveTest : McMd::CfbEndMove
• Cell() : DdMd::Cell
• cell() : DdMd::CellList
• Cell() : McMd::Cell , Tools::Cell
• cell() : Tools::CellList
• cellCapacity() : DdMd::CellList , Tools::CellList
• cellId : McMd::CellTag
• cellIndexFromPosition() : DdMd::CellList , McMd::CellList , Tools::CellList
• cellLength() : DdMd::CellList , Tools::CellList
• CellList() : DdMd::CellList
• cellList() : DdMd::PairPotential
• CellList() : McMd::CellList
• cellList() : McMd::McPairPotential
• CellList() : Tools::CellList
• cellList_ : DdMd::PairPotential , McMd::McPairPotential
• cellPos : McMd::CellTag
• CellTag() : McMd::CellTag
• CfbDoubleRebridgeMove() : McMd::CfbDoubleRebridgeMove
• CfbEndBase() : McMd::CfbEndBase
• CfbEndMove() : McMd::CfbEndMove
• CfbLinear() : McMd::CfbLinear
• CfbLinearEndMove() : McMd::CfbLinearEndMove
• CfbRebridgeBase() : McMd::CfbRebridgeBase
• CfbRebridgeMove() : McMd::CfbRebridgeMove
• CfbReptateMove() : McMd::CfbReptateMove
• CfbReptationMove() : McMd::CfbReptationMove
• CfbRingRebridgeMove() : McMd::CfbRingRebridgeMove
• charge() : McMd::AtomType
• checkInactive() : McMd::Group< NAtom >
• child() : Util::AutoCorrStage< Data, Product > , Util::AverageStage
• chooseMove() : McMd::McMoveManager
• className() : Simp::BoxExternal , Simp::CosineAngle , Simp::CosineDihedral , Simp::CosineSqAngle , Simp::GeneralPeriodicExternal , Simp::HarmonicAngle , Simp::LamellarOrderingExternal , Simp::LocalLamellarOrderingExternal , Simp::MultiHarmonicDihedral , Simp::NucleationExternal , Simp::OrthoBoxExternal , Simp::PeriodicExternal , Simp::SimplePeriodicExternal , Simp::SlitExternal , Simp::SphericalTabulatedExternal , Util::Manager< Data > , Util::ParamComposite
• clear() : CommandLine , DdMd::Analyzer , DdMd::AnalyzerManager , DdMd::Atom , DdMd::AtomContext , DdMd::AutoCorrAnalyzer< Data, Product > , DdMd::AverageAnalyzer , DdMd::Cell , DdMd::CellList , DdMd::ConfigWriter , DdMd::DdTimer , DdMd::EnergyAnalyzer , DdMd::ExternalEnergyAverage , DdMd::Group< N > , DdMd::Integrator , DdMd::LogEnergy , DdMd::Mask , DdMd::OrderParamNucleation , DdMd::OutputBoxdim , DdMd::OutputEnergy , DdMd::OutputPairEnergies , DdMd::OutputPressure , DdMd::OutputStressTensor , DdMd::OutputTemperature , DdMd::PairEnergyAverage , DdMd::PairList , DdMd::StressAutoCorr , DdMd::StructureFactor , DdMd::StructureFactorGrid , DdMd::SymmTensorAverageAnalyzer , DdMd::TensorAverageAnalyzer , DdMd::TrajectoryWriter , DdMd::VanHove , DdMd::VirialStressTensor , DdMd::VirialStressTensorAverage , McMd::Cell , McMd::CellList , McMd::CellTag , McMd::Cluster , McMd::ClusterLink , McMd::LinkMaster , McMd::Mask , McMd::McEnergyAnalyzer , McMd::McVirialStressTensorAverage , McMd::MdEnergyAnalyzer , McMd::MdVirialStressTensorAverage , McMd::PairList , McMd::StressTensorAverage< SystemType > , Tools::Analyzer , Tools::AnalyzerManager , Tools::AtomStorage , Tools::Cell , Tools::CellList , Tools::Configuration , Tools::Species , Tools::TrajectoryWriter , Util::ArraySet< Data > , Util::AutoCorr< Data, Product > , Util::AutoCorrArray< Data, Product > , Util::AutoCorrStage< Data, Product > , Util::Average , Util::AverageStage , Util::Bit , Util::Distribution , Util::DPArray< Data > , Util::DSArray< Data > , Util::FPArray< Data, Capacity > , Util::FSArray< Data, Capacity > , Util::GArray< Data > , Util::GPArray< Data > , Util::GStack< Data > , Util::IntDistribution , Util::Label , Util::MeanSqDispArray< Data > , Util::MemoryCounter , Util::MemoryIArchive , Util::MemoryOArchive , Util::Node< Data > , Util::RadialDistribution , Util::RingBuffer< Data > , Util::Signal< T > , Util::Signal< void > , Util::SSet< Data, Capacity > , Util::SymmTensorAverage , Util::TensorAverage , Util::Timer
• clearAtomPtr() : DdMd::Group< N >
• clearAtoms() : DdMd::AtomStorage
• clearCommunicator() : Util::MpiFileIo
• clearExchange() : DdMd::Plan
• clearFlags() : DdMd::Plan
• clearGhost() : DdMd::Plan
• clearGhosts() : DdMd::AtomMap , DdMd::AtomStorage
• clearGroups() : DdMd::GroupStorage< N >
• clearPairListStatistics() : McMd::MdPairPotential
• clearSendBuffer() : DdMd::Buffer
• clearSnapshot() : DdMd::AtomStorage
• clearStatistics() : DdMd::AtomStorage , DdMd::Buffer , DdMd::GroupStorage< N > , DdMd::PairList , McMd::PairList
• close() : McMd::DCDTrajectoryReader , McMd::DdMdTrajectoryReader , McMd::LammpsDumpReader , McMd::TrajectoryReader , Util::Log
• closeFile() : ParamFileTest
• Cluster() : McMd::Cluster
• cluster() : McMd::ClusterIdentifier
• clusterCOM() : McMd::Cluster
• ClusterHistogram() : McMd::ClusterHistogram
• clusterId() : McMd::ClusterLink
• ClusterIdentifier() : McMd::ClusterIdentifier
• coeff() : Util::Binomial
• collector() : DdMd::AtomStorage , DdMd::GroupStorage< N >
• ColVar() : McMd::ColVar
• ColVarPotentialTmpl() : McMd::ColVarPotentialTmpl< ColVarType, BiasType >
• Command() : McMd::Command
• commandFile() : Util::FileMaster
• commandFileName() : Util::FileMaster
• CommandLine() : CommandLine
• CommandManager() : McMd::CommandManager
• commandManager() : McMd::Simulation
• commit() : Util::MpiStructBuilder
• commitMpiType() : McMd::PairSelector , Simp::BoundaryEnsemble , Simp::EnergyEnsemble , Simp::SpeciesEnsemble , Simp::SpeciesGroup< NAtom > , Util::FArray< Data, Capacity > , Util::IntVector , Util::Pair< Data > , Util::Rational , Util::Tensor , Util::Vector
• ComMSD() : McMd::ComMSD
• communicator() : DdMd::Domain , McMd::Simulation
• CompensatedPair() : Simp::CompensatedPair< BarePair, LinkPotential >
• CompositeBond() : Simp::CompositeBond< BareBond, BarePair >
• CompositionProfile() : McMd::CompositionProfile
• compute() : DdMd::AverageAnalyzer , DdMd::ExternalEnergyAnalyzer , DdMd::KineticEnergyAnalyzer , DdMd::PairEnergyAnalyzer , DdMd::PressureAnalyzer , DdMd::StressAnalyzer , DdMd::SymmTensorAverageAnalyzer , DdMd::TensorAverageAnalyzer , DdMd::VirialStressAnalyzer , McMd::ColVar
• computeAngle() : Simp::Bend , Simp::Torsion
• computeData() : DdMd::AutoCorrAnalyzer< Data, Product > , DdMd::BondTensorAutoCorr , DdMd::StressAutoCorrelation
• computeDerivatives() : Simp::BendForce , Simp::TorsionForce
• computeEnergy() : DdMd::AnglePotentialImpl< Interaction > , DdMd::BondPotentialImpl< Interaction > , DdMd::DihedralPotentialImpl< Interaction > , DdMd::ExternalPotentialImpl< Interaction > , DdMd::PairPotentialImpl< Interaction > , DdMd::Potential , McMd::AnglePotentialImpl< Interaction > , McMd::BondPotentialImpl< Interaction > , McMd::ColVarPotentialTmpl< ColVarType, BiasType > , McMd::DihedralPotentialImpl< Interaction > , McMd::EnergyCalculator , McMd::ExternalPotentialImpl< Interaction > , McMd::LinkPotentialImpl< Interaction > , McMd::McPairPotentialImpl< Interaction > , McMd::MdCoulombPotential , McMd::MdEwaldPairPotentialImpl< Interaction > , McMd::MdEwaldPotential , McMd::MdPairPotentialImpl< Interaction > , McMd::MdSpmePotential , McMd::SpecialPotentialFacade< PotentialType, FactoryType >
• computeForces() : DdMd::AnglePotentialImpl< Interaction > , DdMd::BondPotentialImpl< Interaction > , DdMd::DihedralPotentialImpl< Interaction > , DdMd::ExternalPotentialImpl< Interaction > , DdMd::Integrator , DdMd::PairPotentialImpl< Interaction > , DdMd::Potential , DdMd::Simulation
• computeForcesAndStress() : DdMd::BondPotentialImpl< Interaction > , DdMd::PairPotentialImpl< Interaction > , DdMd::Potential
• computeForcesAndVirial() : DdMd::Integrator , DdMd::Simulation
• computeKineticEnergy() : DdMd::Simulation
• computeKineticStress() : DdMd::Simulation , McMd::MdSystem
• computeNAtomTotal() : DdMd::AtomStorage
• computeNPair() : DdMd::PairPotential
• computeNTotal() : DdMd::GroupStorage< N >
• computePairEnergies() : DdMd::PairPotential , DdMd::PairPotentialImpl< Interaction > , DdMd::Simulation
• computePotentialEnergies() : DdMd::Simulation
• computeStatistics() : DdMd::AtomStorage , DdMd::Buffer , DdMd::GroupStorage< N > , DdMd::PairList
• computeStress() : DdMd::AnglePotentialImpl< Interaction > , DdMd::BondPotentialImpl< Interaction > , DdMd::DihedralPotentialImpl< Interaction > , DdMd::PairPotentialImpl< Interaction > , DdMd::Potential , McMd::AnglePotentialImpl< Interaction > , McMd::BondPotentialImpl< Interaction > , McMd::DihedralPotentialImpl< Interaction > , McMd::LinkPotentialImpl< Interaction > , McMd::McPairPotentialImpl< Interaction > , McMd::McSystem , McMd::MdCoulombPotential , McMd::MdEwaldPairPotentialImpl< Interaction > , McMd::MdEwaldPotential , McMd::MdPairPotentialImpl< Interaction > , McMd::MdSpmePotential , McMd::MdStressAutoCorr , McMd::MdSystem , McMd::StressAutoCorr< SystemType > , McMd::StressCalculator
• computeVirialStress() : DdMd::Simulation , McMd::McSystem , McMd::MdSystem
• ConfigIo() : DdMd::ConfigIo , McMd::ConfigIo
• ConfigIoFactory() : DdMd::ConfigIoFactory
• configIoFactory() : DdMd::Simulation
• ConfigIoFactory() : McMd::ConfigIoFactory
• configIoFactory() : McMd::System
• ConfigReader() : Tools::ConfigReader
• configReader() : Tools::Processor
• ConfigReaderFactory() : Tools::ConfigReaderFactory
• configuration() : Tools::Analyzer , Tools::ConfigReader
• Configuration() : Tools::Configuration
• configuration() : Tools::TrajectoryReader
• ConfigWriter() : DdMd::ConfigWriter , McMd::ConfigWriter , Tools::ConfigWriter
• configWriter() : Tools::Processor
• ConfigWriterFactory() : Tools::ConfigWriterFactory
• ConstAngleIterator : McMd::Molecule
• ConstArrayIterator() : Util::ConstArrayIterator< Data >
• ConstAtomIterator : McMd::Molecule
• ConstBondIterator : McMd::Molecule
• ConstDihedralIterator : McMd::Molecule
• ConstLinkIterator : McMd::LinkMaster
• ConstMoleculeIterator : McMd::System
• ConstPArrayIterator() : Util::ConstPArrayIterator< Data >
• context() : DdMd::Atom
• copy() : Util::FlexPtr< T >
• copyLocalGhost() : DdMd::Atom
• copyLocalUpdate() : DdMd::Atom
• corrTime() : Util::AutoCorr< Data, Product > , Util::AutoCorrArray< Data, Product > , Util::AutoCorrStage< Data, Product >
• cosFactors_ : DdMd::OrderParamNucleation
• CosineAngle() : Simp::CosineAngle
• CosineDihedral() : Simp::CosineDihedral
• CosineSqAngle() : Simp::CosineSqAngle
• cosPhi : Simp::Torsion
• cosTheta : Simp::Bend
• CoulombFactory() : McMd::CoulombFactory
• coulombFactory() : McMd::System
• coulombPotential() : McMd::McSystem , McMd::MdSystem
• coulombStyle() : McMd::System
• count() : Util::MemoryCounter
• createsStress() : McMd::StressCalculator
• cross() : Util::IntVector , Util::Vector
• Crosslinker() : McMd::Crosslinker
• currentAccumulators_ : McMd::CompositionProfile
• cursor() : Util::MemoryIArchive , Util::MemoryOArchive , Util::XmlBase
• cutoff() : DdMd::PairPotential
• cutoff_ : DdMd::PairPotential , Simp::LJPair
• cutoffSq() : Simp::CompensatedPair< BarePair, LinkPotential > , Simp::DpdPair , Simp::LJPair
• cutoffSq_ : Simp::LJPair
• CvBias() : McMd::CvBias