Here is a list of all documented class members with links to the class documentation for each member:

- r -

• R() : Util::PointSymmetry
• R_ : McMd::RingTetraRebridgeMove
• RadialDistribution() : Util::RadialDistribution
• RadiusGyration() : McMd::RadiusGyration
• RaggedMatrix() : Util::RaggedMatrix< Data >
• random() : DdMd::Simulation , DdMd::SimulationAccess , McMd::McMove , McMd::Simulation
• Random() : Util::Random
• randomAngle() : McMd::AnglePotential , McMd::AnglePotentialImpl< Interaction > , Simp::CosineAngle , Simp::CosineSqAngle , Simp::HarmonicAngle
• randomBondLength() : DdMd::BondPotential , DdMd::BondPotentialImpl< Interaction > , McMd::BondPotential , McMd::BondPotentialImpl< Interaction > , McMd::LinkPotentialImpl< Interaction > , Simp::CompositeBond< BareBond, BarePair > , Simp::FeneBond , Simp::HarmonicBond , Simp::HarmonicL0Bond
• randomCosineAngle() : McMd::AnglePotential , McMd::AnglePotentialImpl< Interaction > , Simp::CosineAngle , Simp::CosineSqAngle , Simp::HarmonicAngle
• randomLink() : McMd::LinkMaster
• randomMolecule() : McMd::System
• randomPosition() : Simp::MonoclinicBoundary , Simp::OrthorhombicBoundary
• rank() : Util::Grid , Util::GridArray< Data >
• rank_ : McMd::Perturbation
• RArray() : Util::RArray< Data >
• Rational() : Util::Rational
• RDF() : McMd::RDF
• reactivate() : McMd::Activate
• read() : McMd::ConfigIo , McMd::DdMdConfigIo , McMd::LammpsConfigIo , McMd::McMdConfigIo , McMd::SmpConfigIo , Tools::TypeMap , Util::ParamComposite
• readAtom() : McMd::McConfigIo , McMd::McMdConfigIo , McMd::MdConfigIo
• readAuxiliaryFile() : Tools::ConfigReader , Tools::ConfigWriter , Tools::HoomdConfigReader , Tools::HoomdConfigWriter
• readBegin() : Util::ParamComposite
• readBlank() : Util::ParamComposite
• readCArray() : Util::ParamComposite
• readCArray2D() : Util::ParamComposite
• readCommand() : McMd::CommandManager , McMd::McSimulation , McMd::MdSimulation
• readCommands() : DdMd::Simulation , McMd::McSimulation , McMd::MdSimulation , Tools::Processor
• readConfig() : DdMd::ConfigIo , DdMd::DdMdConfigIo , DdMd::DdMdOrderedConfigIo , DdMd::LammpsConfigIo , DdMd::SerializeConfigIo , DdMd::Simulation , McMd::McSystem , McMd::MdSystem , McMd::System , Tools::ConfigReader , Tools::DdMdConfigReader , Tools::HoomdConfigReader , Tools::Processor
• readDArray() : Util::ParamComposite
• readDMatrix() : Util::ParamComposite
• readDSymmMatrix() : Util::ParamComposite
• readEnd() : Util::ParamComposite
• readEnsembles() : DdMd::Simulation , McMd::System
• readFArray() : Util::ParamComposite
• readFileMaster() : DdMd::Simulation , McMd::System
• readFrame() : McMd::DCDTrajectoryReader , McMd::DdMdTrajectoryReader , McMd::LammpsDumpReader , McMd::TrajectoryReader , Tools::DdMdTrajectoryReader , Tools::LammpsDumpReader , Tools::TrajectoryReader
• readHeader() : Tools::DdMdTrajectoryReader , Tools::TrajectoryReader
• readInterval() : DdMd::Analyzer , DdMd::Modifier , McMd::Analyzer , Tools::Analyzer
• readLinkMaster() : McMd::System
• readMoleculeState() : McMd::SpeciesMutator
• readObject() : Util::Factory< Data >
• readOptional() : Util::ParamComposite
• readOptionalCArray() : Util::ParamComposite
• readOptionalCArray2D() : Util::ParamComposite
• readOptionalDArray() : Util::ParamComposite
• readOptionalDMatrix() : Util::ParamComposite
• readOptionalDSymmMatrix() : Util::ParamComposite
• readOptionalFArray() : Util::ParamComposite
• readOutputFileName() : DdMd::Analyzer , McMd::Analyzer , Tools::Analyzer
• readParam() : DdMd::Simulation , McMd::McSimulation , McMd::MdSimulation , Simp::SpeciesEnsemble , Tools::ChainMaker , Tools::Configuration , Tools::Processor , Util::Begin , Util::Blank , Util::End , Util::Manager< Data > , Util::ParamComponent , Util::ParamComposite , Util::Parameter
• readParamComposite() : Util::ParamComposite
• readParamCompositeOptional() : Util::ParamComposite
• readParameters() : DdMd::AnalyzerManager , DdMd::AnglePotentialImpl< Interaction > , DdMd::AngleStorage , DdMd::AtomDistributor , DdMd::AtomStorage , DdMd::AutoCorrAnalyzer< Data, Product > , DdMd::AverageAnalyzer , DdMd::BondPotentialImpl< Interaction > , DdMd::BondStorage , DdMd::Buffer , DdMd::ConfigWriter , DdMd::DdMdGroupTrajectoryWriter , DdMd::DihedralPotentialImpl< Interaction > , DdMd::DihedralStorage , DdMd::Domain , DdMd::EnergyAnalyzer , DdMd::ExternalEnergyAverage , DdMd::ExternalPotentialImpl< Interaction > , DdMd::GroupDistributor< N > , DdMd::GroupStorage< N > , DdMd::Integrator , DdMd::LogEnergy , DdMd::ModifierManager , DdMd::NphIntegrator , DdMd::NptIntegrator , DdMd::NveIntegrator , DdMd::NvtIntegrator , DdMd::NvtLangevinIntegrator , DdMd::OrderParamNucleation , DdMd::OutputBoxdim , DdMd::OutputEnergy , DdMd::OutputPairEnergies , DdMd::OutputPressure , DdMd::OutputStressTensor , DdMd::OutputTemperature , DdMd::PairEnergyAnalyzer , DdMd::PairEnergyAverage , DdMd::PairPotential , DdMd::PairPotentialImpl< Interaction > , DdMd::Simulation , DdMd::StressAutoCorr , DdMd::StructureFactor , DdMd::StructureFactorGrid , DdMd::SymmTensorAverageAnalyzer , DdMd::TensorAverageAnalyzer , DdMd::TrajectoryWriter , DdMd::VanHove , DdMd::VirialStressTensor , DdMd::VirialStressTensorAverage , McMd::Analyzer , McMd::AnalyzerManager , McMd::AnglePotentialImpl< Interaction > , McMd::AtomDisplaceMove , McMd::AtomMSD , McMd::AverageAnalyzer< SystemType > , McMd::BennettsMethod , McMd::BlockRadiusGyration , McMd::BondLengthDist , McMd::BondPotentialImpl< Interaction > , McMd::BoundaryAverage , McMd::CfbDoubleRebridgeMove , McMd::CfbEndBase , McMd::CfbEndMove , McMd::CfbLinear , McMd::CfbLinearEndMove , McMd::CfbRebridgeBase , McMd::CfbRebridgeMove , McMd::CfbReptateMove , McMd::CfbReptationMove , McMd::CfbRingRebridgeMove , McMd::ClusterHistogram , McMd::ColVarPotentialTmpl< ColVarType, BiasType > , McMd::ComMSD , McMd::CompositionProfile , McMd::ConfigWriter , McMd::Crosslinker , McMd::DihedralPotentialImpl< Interaction > , McMd::DpdMove , McMd::EndSwapMove , McMd::EndtoEnd , McMd::EndtoEndXYZ , McMd::ExternalPotentialImpl< Interaction > , McMd::G1MSD , McMd::GcSliplinkMove , McMd::HarmonicCvBias , McMd::HomopolymerSemiGrandMove , McMd::HomopolymerSG , McMd::HybridMdMove , McMd::HybridNphMdMove , McMd::InterIntraLink , McMd::IntraBondStressAutoCorr< SystemType > , McMd::IntraBondTensorAutoCorr< SystemType > , McMd::IntraPairAutoCorr , McMd::IntraStructureFactor , McMd::IntraStructureFactorGrid , McMd::LammpsDumpWriter , McMd::LinearCvBias , McMd::LinearRouseAutoCorr , McMd::LinearSG , McMd::LinkLengthDist , McMd::LinkLifeTime , McMd::LinkLTPos , McMd::LinkMaster , McMd::LinkMSD , McMd::LinkPotentialImpl< Interaction > , McMd::LogProgress , McMd::McEnergyAnalyzer , McMd::McEnergyOutput , McMd::McEnergyPerturbation , McMd::McExternalPerturbation< Interaction > , McMd::McMove , McMd::McMoveManager , McMd::McMuExchange , McMd::McNVTChemicalPotential , McMd::McPairEnergyAverage , McMd::McPairExternalPerturbation< PairInteraction, ExternalInteraction > , McMd::McPairPerturbation< Interaction > , McMd::McPairPotentialImpl< Interaction > , McMd::McSimulation , McMd::McSystem , McMd::McVirialStressTensorAverage , McMd::MdEnergyAnalyzer , McMd::MdEnergyOutput , McMd::MdEwaldPairPotentialImpl< Interaction > , McMd::MdEwaldPotential , McMd::MdKineticEnergyAverage , McMd::MdMove , McMd::MdPairEnergyCoefficients , McMd::MdPairPotentialImpl< Interaction > , McMd::MdPotentialEnergyAverage , McMd::MdSimulation , McMd::MdSpmePotential , McMd::MdSystem , McMd::MdVirialStressTensorAverage , McMd::NLinkAverage , McMd::NphIntegrator , McMd::NveVvIntegrator , McMd::NvtDpdVvIntegrator , McMd::NvtLangevinIntegrator , McMd::NvtNhIntegrator , McMd::PairList , McMd::Perturbation , McMd::PerturbDerivative , McMd::PressureAverage< SystemType > , McMd::RadiusGyration , McMd::RDF , McMd::ReplicaMove , McMd::RigidDisplaceMove , McMd::RingOctaRebridgeMove , McMd::RingRouseAutoCorr , McMd::RingTetraRebridgeMove , McMd::SemiGrandDistribution , McMd::Simulation , McMd::Sliplinker , McMd::SliplinkerAll , McMd::SliplinkerEnd , McMd::SliplinkMove , McMd::SpecialPotentialFacade< PotentialType, FactoryType > , McMd::SSChainDist , McMd::StressAutoCorr< SystemType > , McMd::StressTensorAverage< SystemType > , McMd::StructureFactor , McMd::StructureFactorGrid , McMd::StructureFactorP , McMd::StructureFactorPGrid , McMd::System , McMd::TrajectoryWriter , McMd::TypeDistribution , McMd::VanHove , McMd::VelProf , Simp::BoundaryEnsemble , Simp::BoxExternal , Simp::CompensatedPair< BarePair, LinkPotential > , Simp::CompositeBond< BareBond, BarePair > , Simp::CosineAngle , Simp::CosineDihedral , Simp::CosineSqAngle , Simp::DpdPair , Simp::EnergyEnsemble , Simp::EwaldInteraction , Simp::FeneBond , Simp::GeneralPeriodicExternal , Simp::HarmonicAngle , Simp::HarmonicBond , Simp::HarmonicL0Bond , Simp::LamellarOrderingExternal , Simp::LJPair , Simp::LocalLamellarOrderingExternal , Simp::MultiHarmonicDihedral , Simp::NucleationExternal , Simp::OrthoBoxExternal , Simp::PeriodicExternal , Simp::SimplePeriodicExternal , Simp::SlitExternal , Simp::Species , Simp::SphericalTabulatedExternal , Simp::WcaPair , Tools::AnalyzerManager , Tools::AtomMSD , Tools::Configuration , Tools::LogStep , Tools::PairEnergy , Tools::Processor , Tools::TrajectoryWriter , Util::AutoCorr< Data, Product > , Util::AutoCorrArray< Data, Product > , Util::AutoCorrelation< Data, Product > , Util::Average , Util::Distribution , Util::FileMaster , Util::IntDistribution , Util::Manager< Data > , Util::MeanSqDispArray< Data > , Util::ParamComposite , Util::RadialDistribution , Util::Random , Util::SymmTensorAverage , Util::TensorAverage
• readParamOptional() : Util::Manager< Data > , Util::ParamComposite
• readPerturbation() : McMd::System
• readPotentialStyles() : DdMd::Simulation , McMd::System
• readProbability() : McMd::McMove
• readReplicaMove() : McMd::System
• readSpeciesParam() : McMd::HomopolymerSG , McMd::LinearSG , Simp::Diblock , Simp::Homopolymer , Simp::HomoRing , Simp::Multiblock , Simp::Point , Simp::Species
• readStandardCommand() : McMd::CommandManager , McMd::McCommandManager , McMd::MdCommandManager
• readStructure() : Simp::Species
• readValue() : Util::CArray2DParam< Type > , Util::CArrayParam< Type > , Util::DArrayParam< Type > , Util::DMatrixParam< Type > , Util::DSymmMatrixParam< Type > , Util::FArrayParam< Type, N > , Util::Parameter , Util::ScalarParam< Type >
• receive() : DdMd::AtomDistributor , DdMd::GroupDistributor< N >
• reciprocalBasisVector() : Simp::MonoclinicBoundary , Simp::OrthorhombicBoundary
• recordFailure() : TestRunner
• recordSuccess() : TestRunner
• recv() : DdMd::Buffer , Util::MemoryIArchive
• recvSize() : DdMd::Buffer
• reduce() : DdMd::DdTimer , Util::Distribution
• reduceEnergy() : DdMd::Potential
• reduceStress() : DdMd::Potential
• reflect() : Util::Polynomial< T >
• registerDescendant() : Util::AutoCorrelation< Data, Product > , Util::AutoCorrStage< Data, Product >
• registerObserver() : Util::Notifier< Event >
• release() : Util::MemoryIArchive
• remove() : DdMd::GroupStorage< N > , Util::ArraySet< Data > , Util::List< Data > , Util::SSet< Data, Capacity >
• removeAllMolecules() : McMd::System
• removeAtom() : DdMd::AtomStorage
• removeDriftVelocity() : DdMd::Simulation , McMd::MdSystem
• removeGhost() : DdMd::AtomMap , DdMd::AtomStorage
• removeLink() : McMd::LinkMaster
• removeLocal() : DdMd::AtomMap
• removeMolecule() : McMd::System
• removeObserver() : Util::Notifier< Event >
• reneighbor() : McMd::DeformCommand , McMd::McDeformCommand , McMd::MdDeformCommand
• ReplicaMove() : McMd::ReplicaMove
• replicaMove() : McMd::System
• report() : TestRunner
• reserve() : Util::GArray< Data > , Util::GPArray< Data > , Util::GStack< Data >
• reset() : Util::MemoryIArchive , Util::ScopedPtr< T >
• reSetAtom() : McMd::LinkMaster
• ReSetAtomEvent() : McMd::ReSetAtomEvent
• reSetAtoms() : McMd::LinkMaster
• resetParam() : Util::Begin , Util::End , Util::ParamComponent , Util::ParamComposite
• resetRegion() : Simp::OrthoRegion
• resize() : Util::DSArray< Data > , Util::GArray< Data >
• returnMolecule() : McMd::Simulation
• returnPtr() : DdMd::GroupStorage< N >
• reverseUpdate() : DdMd::Exchanger
• ReverseUpdate : DdMd::Modifier::Flags
• reverseUpdateFlag() : DdMd::Potential , DdMd::Simulation , DdMd::SimulationAccess
• RigidDisplaceMove() : McMd::RigidDisplaceMove
• Ring() : Simp::Ring
• RingBuffer() : Util::RingBuffer< Data >
• RingOctaRebridgeMove() : McMd::RingOctaRebridgeMove
• RingRouseAutoCorr() : McMd::RingRouseAutoCorr
• RingTetraRebridgeMove() : McMd::RingTetraRebridgeMove
• rows_ : Util::RaggedMatrix< Data >
• rSpaceAccumulator_ : McMd::MdCoulombPotential
• rSpaceCutoff() : Simp::EwaldInteraction
• rSpaceCutoffSq() : Simp::EwaldInteraction
• rSpaceEnergy() : McMd::EwaldRSpaceAccumulator , McMd::MdCoulombPotential , Simp::EwaldInteraction
• rSpaceForceOverR() : Simp::EwaldInteraction
• rSpaceStress() : McMd::EwaldRSpaceAccumulator , McMd::MdCoulombPotential
• run() : CompositeTestRunner , DdMd::Integrator , DdMd::TwoStepIntegrator , TestRunner , UnitTestRunner< UnitTestClass >